PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02761g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 439aa    MW: 48337 Da    PI: 6.5622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02761g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.5e-15281327354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++hn+ Er+RRdriN+++ +L++l+P +      K +Ka++L +++eY+k+L
  Niben101Scf02761g01001.1 281 ATHNQSERKRRDRINQRLKTLQKLVPYS-----SKTNKAAMLDEVIEYLKKL 327
                               69*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.58E-16274332No hitNo description
PROSITE profilePS5088817.187278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-13281327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18281348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-18282341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNQLNYQVAE LTWENGQLEM HGLGPPRVPN NKPLVNSSPI EYTWDNKSHV GGTLESIVNQ  60
ATGIPHDHQK FAIDEGGDRE EDLDHWFDKC LADTQATTTT VGVAMDALVP SFADTQNSHQ  120
GEQPPTHVYG IPTCLSGGST HMTSCSDVVN TTDGEMLCAN TGAAYEEISK DLEITTYFGK  180
REVKNLICGP SNRRTGLNEE HSDVVLSCMA DQRVSRRDNI DTSERDLGAE KFTSISMSSV  240
EKTSSAKQCN SKTKPEAGDE DDKKKRSKIS SFSRKRSRAA ATHNQSERKR RDRINQRLKT  300
LQKLVPYSSK TNKAAMLDEV IEYLKKLKAQ VEAMQQQQQQ HLQMLMMASM DMAGFSGALS  360
HPNITAMPSL LHPTASFMPI PSGVSPGDPN INAASTSSLV PDPFAAFRTC QSQGQVHFHS  420
LDMARCEATS RSNEFPKIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273290RKRSRAAATHNQSERKRR
2286291ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762879.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A1U7VKK70.0A0A1U7VKK7_NICSY; transcription factor UNE10-like
STRINGXP_009762879.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-41bHLH family protein