PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02775g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 234aa    MW: 26076.2 Da    PI: 5.1559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02775g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18132182255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr ++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Niben101Scf02775g00002.1 132 HYRGVRVRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAAFAYDKAAFRMRG 182
                               8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-31131190IPR001471AP2/ERF domain
CDDcd000181.06E-29131190No hitNo description
PROSITE profilePS5103223.683132190IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23132192IPR016177DNA-binding domain
PfamPF008474.5E-12132182IPR001471AP2/ERF domain
SMARTSM003809.9E-37132196IPR001471AP2/ERF domain
PRINTSPR003678.2E-10133144IPR001471AP2/ERF domain
PRINTSPR003678.2E-10156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MYANCEVDND FAILESIRLH LLEDWEAPLT SSDNSTASDL SRSNSIESNM FPNCLPNQYN  60
YSAAMFFNDI FNEGFVGYGF EPASEFTLPT IKLEPEMTVQ SPEIWNLPEF VAPPVTAAEV  120
KLEPTAPPKA KHYRGVRVRP WGKFAAEIRD PAKNGARVWL GTYETAEDAA FAYDKAAFRM  180
RGSRALLNFP LRINSGEPDP IRVGSKRSSM SPEYSSSSSS SSPSSTKRRK NVVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-41129197270ATERF1
3gcc_A6e-41129197270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252994.11e-147PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803377e-56EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A1J6I2Y61e-145A0A1J6I2Y6_NICAT; Ethylene-responsive transcription factor 2
STRINGXP_009775795.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-47ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]