PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02805g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 318aa    MW: 36651.3 Da    PI: 9.6651
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02805g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.32e-19110161255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                rl+Wtp+L ++F +av++L G  kA Pk i+e+m+v+ Lt ++++ HLQkYR+
  Niben101Scf02805g01014.1 110 RRLQWTPDLEKKFKKAVRRL-GL-KARPKLIMEMMDVPNLTQKQIANHLQKYRV 161
                               69******************.54.6****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.9E-5157No hitNo description
PROSITE profilePS5129413.223106164IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-20106163IPR009057Homeodomain-like
SuperFamilySSF466894.93E-13107164IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-17110162IPR006447Myb domain, plants
PfamPF002492.9E-10111160IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSNVKRGMV EQAVTQGVCF SFMKPISTKK LKNIWQHVYR HQKKANKKSE NNRAINQVEV  60
MDSTTCANKK MQDRKGKSIV NSSEEKDHSE EEDHSLVSER TMDGQQKKRR RLQWTPDLEK  120
KFKKAVRRLG LKARPKLIME MMDVPNLTQK QIANHLQKYR VQKQEAPHVQ PTTYSIVNQS  180
EIMSRRPHPL VPISHSQYGV NSMSQSLSFP LNTSTLFHSG TNMFNQFPDN GHHFNVLNLD  240
EFAVNFNKPF QETYLPQPPA LPSLVSPNPD DYVLTELNGW GDYLVSPENF NGETIENQID  300
SYYSSTQDNV PTSWNQNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240418.10.0PREDICTED: two-component response regulator ORR26-like
TrEMBLA0A1J6JR740.0A0A1J6JR74_NICAT; Two-component response regulator orr26
STRINGXP_009774203.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4899714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-19response regulator 2