PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02807g11010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 102aa    MW: 11446.5 Da    PI: 10.8956
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02807g11010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-181184989
                      FAR1  9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                               vGF +++++s++sk++g++++ +  Cs+ g ++++ ++       r+   t+Cka++++k+++dgkw+++++ +eHnHe+
  Niben101Scf02807g11010.1 11 LVGFGITIKASRRSKKSGKFIDVKIACSRVGAKRRSGSS-------RSCPSTDCKACVHMKRRQDGKWYIYSFMKEHNHEF 84
                              59******************************9998877.......88999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-161184IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MQLMIQVKVM LVGFGITIKA SRRSKKSGKF IDVKIACSRV GAKRRSGSSR SCPSTDCKAC  60
VHMKRRQDGK WYIYSFMKEH NHEFPLMTFI APSGEAASNG LM
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018628908.16e-39PREDICTED: protein FAR1-RELATED SEQUENCE 2
SwissprotQ3EBQ36e-30FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A1S3YBK16e-37A0A1S3YBK1_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRINGXP_009610340.12e-38(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.33e-32FAR1-related sequence 2
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]