PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02816g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 1295aa MW: 141237 Da PI: 4.5568

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02816g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	76.8	3.8e-24	31	119	3	96
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 f+++ws+eDe++lL G+i+f++++g + + +++afy++v +s+ + ++ +ql eKir L+kK++k+v+ ++s +++h+ + Niben101Scf02816g03001.1 31 FSKVWSDEDEVSLLAGIIKFRKEKGLDIQTNMSAFYNYVIDSLMLGATLTQLREKIRALRKKYEKNVSG-----KNSPKTPHEVE 110 899*************************************************************999.....678899* PP DUF573 88 ifelskkiW 96 f+ls+ iW Niben101Scf02816g03001.1 111 LFQLSQNIW 119 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.2E-22	31	119	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 1295 aa Download sequence Send to blast
MADDAGSGSS YTVQAQNQRT AQKNKSKHTP FSKVWSDEDE VSLLAGIIKF RKEKGLDIQT 60 NMSAFYNYVI DSLMLGATLT QLREKIRALR KKYEKNVSGK NSPKTPHEVE LFQLSQNIWM 120 VNAKESEHQN EFVGGKLETP NTSEPRQPVK QNLLENWMSH QHIPEIEQPT QEIIPKIGLG 180 SQNLLALLKR IAEDVELVAN AMSRSQRQVD GERSYLYFQS TDLLVKFGRL VKEIKAKPEM 240 THSSELLEQE ILKAYLEAKV EHAQLVSNAY NTFIQVDVAV AAPTKPMKKG LIFCLSLFVD 300 FKLLFYLLYL CTDLKSSCCM STTILFSCTP LPLENQRIVS WLRRRYLVGG VTNSYVFTGK 360 REAENEIEKL MSTKKQKKHL AVAQAAEKKK SDAKAQKKKK KKKKKQETSS CDDNSQPEDE 420 KKLTEAAAPP KKVTPAKNEK LARDDSDSSG EDEAPSKKAV ATSSKNCLAA KKNDDPRDDS 480 NSEAKKPPAN GSAAASKKDE SSDESGSEDD SSSSEEEEAP AAALKKEESN DDDDDDDDEP 540 LSKVVSQPTK APQAMKKNSD SSEETDSDGD DSDSDEGKAV AVCKRKAPSS ADSDDESKDD 600 TSGESNEEER RKKKIKPSRT PTVSNSRKKE SSSEEDVPEA KITPANGSAA ASKKNQSSDE 660 SSAEEDSSSE EEEEDAVNKV PTAAPKKGTA ATSKKEESSD ESSSDDEPSS TPAVSKKESC 720 HEESSDEVES SEEKEDEKPS RTPKKVPSSA DSDDESKDDT SGESNEEERR KKKIKPSRTP 780 TVSNSRKKES SSEEDVPEAK ITPANGSAAA SKKNQSSDES SAEEDSSSEE EEEDAVNKVP 840 TAAPKKGTAA TSKKEESSDE SSSDDEPSST PAVSKKESCH EESSDEVESS EEKEDEKPSR 900 TPKKVPSSAD SDDESKDDTS GESNEEERRK KKIKPSRTPT VSNSRKKESS SEEDVPEAKI 960 TPANGSAAAS KKNQSSDESS AEEDSSSEEE EEDAVNKVPT AAPKKGTAAT SKKEESSDES 1020 SSDDEPSSTP AVSKKESCHE ESSDEVESSE EKEDEKPSRT PKKVPSSADS DDESKDDTSG 1080 ESNEEERRKK KIKPSRTPTV SNSRKKESSS EEDVPEAKIT PANGSAAASK KNQSSDESSA 1140 EEDSSSEEEE EDAVNKVPTA APKKGTAATS KKEESSDESS SDDEPSSTPA VSKKESCHEE 1200 SSDEVESSEE KEDEKPSRTP KKLSSTPAVS KKESCHEESS DEVESSEEKE DEKPSRTPKK 1260 QKTPITPKAQ PRRSKTLFVG NLPNSVEDGS FEGSC

Sequence ? help Back to Top

Protein Sequence Length: 1295 aa Download sequence Send to blast

MADDAGSGSS YTVQAQNQRT AQKNKSKHTP FSKVWSDEDE VSLLAGIIKF RKEKGLDIQT  60
NMSAFYNYVI DSLMLGATLT QLREKIRALR KKYEKNVSGK NSPKTPHEVE LFQLSQNIWM  120
VNAKESEHQN EFVGGKLETP NTSEPRQPVK QNLLENWMSH QHIPEIEQPT QEIIPKIGLG  180
SQNLLALLKR IAEDVELVAN AMSRSQRQVD GERSYLYFQS TDLLVKFGRL VKEIKAKPEM  240
THSSELLEQE ILKAYLEAKV EHAQLVSNAY NTFIQVDVAV AAPTKPMKKG LIFCLSLFVD  300
FKLLFYLLYL CTDLKSSCCM STTILFSCTP LPLENQRIVS WLRRRYLVGG VTNSYVFTGK  360
REAENEIEKL MSTKKQKKHL AVAQAAEKKK SDAKAQKKKK KKKKKQETSS CDDNSQPEDE  420
KKLTEAAAPP KKVTPAKNEK LARDDSDSSG EDEAPSKKAV ATSSKNCLAA KKNDDPRDDS  480
NSEAKKPPAN GSAAASKKDE SSDESGSEDD SSSSEEEEAP AAALKKEESN DDDDDDDDEP  540
LSKVVSQPTK APQAMKKNSD SSEETDSDGD DSDSDEGKAV AVCKRKAPSS ADSDDESKDD  600
TSGESNEEER RKKKIKPSRT PTVSNSRKKE SSSEEDVPEA KITPANGSAA ASKKNQSSDE  660
SSAEEDSSSE EEEEDAVNKV PTAAPKKGTA ATSKKEESSD ESSSDDEPSS TPAVSKKESC  720
HEESSDEVES SEEKEDEKPS RTPKKVPSSA DSDDESKDDT SGESNEEERR KKKIKPSRTP  780
TVSNSRKKES SSEEDVPEAK ITPANGSAAA SKKNQSSDES SAEEDSSSEE EEEDAVNKVP  840
TAAPKKGTAA TSKKEESSDE SSSDDEPSST PAVSKKESCH EESSDEVESS EEKEDEKPSR  900
TPKKVPSSAD SDDESKDDTS GESNEEERRK KKIKPSRTPT VSNSRKKESS SEEDVPEAKI  960
TPANGSAAAS KKNQSSDESS AEEDSSSEEE EEDAVNKVPT AAPKKGTAAT SKKEESSDES  1020
SSDDEPSSTP AVSKKESCHE ESSDEVESSE EKEDEKPSRT PKKVPSSADS DDESKDDTSG  1080
ESNEEERRKK KIKPSRTPTV SNSRKKESSS EEDVPEAKIT PANGSAAASK KNQSSDESSA  1140
EEDSSSEEEE EDAVNKVPTA APKKGTAATS KKEESSDESS SDDEPSSTPA VSKKESCHEE  1200
SSDEVESSEE KEDEKPSRTP KKLSSTPAVS KKESCHEESS DEVESSEEKE DEKPSRTPKK  1260
QKTPITPKAQ PRRSKTLFVG NLPNSVEDGS FEGSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	404	KKKSDAKAQKKKKKKKKK
2	396	404	KKKKKKKKK
3	398	404	KKKKKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018633644.1	0.0	PREDICTED: nucleolin 2-like isoform X4
TrEMBL	A0A314L0W6	0.0	A0A314L0W6_NICAT; Uncharacterized protein
STRING	XP_009627208.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13805	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	5e-14	DNA-binding storekeeper protein-related transcriptional regulator