PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02821g03014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 521aa    MW: 57761.4 Da    PI: 4.5677
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02821g03014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.8e-36281192102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+y++++d+++++++sw  ++nsfvv+d+ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF++  F
  Niben101Scf02821g03014.1  28 FLVKTYDMVDDPSTDKIVSWGPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVEPDR---------WEFANVGF 103
                               9********************999******************************************99.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                +g+k+ll++i+r+k 
  Niben101Scf02821g03014.1 104 LRGQKHLLRNINRRKP 119
                               *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.8E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6224117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3925117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.2E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGSTSGDAGG GDSPSPAPMP SANAPPPFLV KTYDMVDDPS TDKIVSWGPT NNSFVVWDPP  60
EFAKDLLPKY FKHNNFSSFV RQLNTYGFRK VEPDRWEFAN VGFLRGQKHL LRNINRRKPA  120
HGHTQQQLHG QSASVGACVE VGKFGLEEEV ERLKRDKNVL MQELVKLRQQ QQTTDNQMQT  180
MVQSLQVMEQ RQQQMMSFLA KVVNSPGFLA QFVQQQNDSN RRTMEGNKKR RIKQDFPSGD  240
LSVSPADGQI VKYQPVVNEA AKAILRQIMK QDSSPRLENF SNSPESVLIC DGSPQSNALD  300
SGSSNRVSGV TLQEVPPTSA QPFASATSAV AGQSSSASIS EIQSSPLCKS FEIADIQFSD  360
ICSLVGGHDL PPVSLSPSDM TMPELSQIQE IVPVNNMDTD GSEMENGSFM DPTLDGNGNV  420
PLGIDTFSPD PQNEWQSTLM DDIGELPSLG DPFWEKFLQS PLPTDTEEMD SVEIEDIKTT  480
ETEPLENGWD KAQHMEHLTE QMELLTSNSK RYDKGHQTKF R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-29911710129Heat shock factor protein 1
5d5v_B4e-29911710129Heat shock factor protein 1
5d5v_D4e-29911710129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226233NKKRRIKQ
2227232KKRRIK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267090.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A314L0P40.0A0A314L0P4_NICAT; Heat shock factor protein hsf8
STRINGXP_009781208.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-125heat shock factor 3
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]