PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02821g14006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 177aa MW: 20148 Da PI: 8.878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02821g14006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.4e-10	112	141	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+++N+ ++ Lr+l+P++ Niben101Scf02821g14006.1 112 QRMTHIAVERNRRKQMNEHLAVLRSLMPES 141 79**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.47E-9	109	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.04E-8	110	145	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.4E-9	110	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.864	111	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-8	112	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MALEALSSNE LLNFIIYDTI SATPFTSNNL DPSSSENAAS GTLLLDHENG LLTLPQHFCG 60 HEQQYSTASV PETTTITTIR REKNLAVAQG SGRKKRRRRP KVCKNKEEAE NQRMTHIAVE 120 RNRRKQMNEH LAVLRSLMPE SYVQRVCNIT LSFIHSLVFL NIILRITMTF DNIFTTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	98	RKKRRRR
2	93	98	KKRRRR
3	112	123	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763212.1	1e-82	PREDICTED: transcription factor bHLH71-like
Refseq	XP_016456410.1	9e-83	PREDICTED: transcription factor bHLH71-like
TrEMBL	A0A1S3YWI7	2e-81	A0A1S3YWI7_TOBAC; transcription factor bHLH71-like
TrEMBL	A0A1U7V4T9	2e-81	A0A1U7V4T9_NICSY; transcription factor bHLH71-like
STRING	XP_009763212.1	4e-82	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5632	24	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	7e-18	bHLH family protein