PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02827g08002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 549aa    MW: 60972.2 Da    PI: 6.0994
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02827g08002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.51.5e-23319369152
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                               k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+g+t+++v+SHLQ 
  Niben101Scf02827g08002.1 319 KMKVDWSPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGITRHNVASHLQE 369
                               5689*****************.*****************************5 PP
2Response_reg31.21.1e-11221281109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl+ d++ + +  +r+ lek +y +v ++ +  eal  + +k   +++ ++ +   ++dG+  l+ +++ + +lp i+ +   + 
  Niben101Scf02827g08002.1  22 VLLLDEDCNSAAEMRSRLEKLDY-IVYSFCNENEALSAISNKSedFHVAIVEVTAGNSDGV--LRFLESTK-DLPTIMTSNIHSL 102
                               7889999999999**********.***************666556***************5..67776666.9*******9999* PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               +++ +++ +Ga +fl Kp + ++l +
  Niben101Scf02827g08002.1 103 STMMKCIALGAVEFLQKPLSDDKLKN 128
                               **********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-1618137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-1618142No hitNo description
SMARTSM004480.002820130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.72921134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-822128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.45E-1023133No hitNo description
Gene3DG3DSA:1.10.10.606.3E-22316369IPR009057Homeodomain-like
PROSITE profilePS5129411.042316375IPR017930Myb domain
SuperFamilySSF466891.97E-14317373IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-21319369IPR006447Myb domain, plants
PfamPF002491.1E-5322369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MICTETNDQL LGWKDFPKGL KVLLLDEDCN SAAEMRSRLE KLDYIVYSFC NENEALSAIS  60
NKSEDFHVAI VEVTAGNSDG VLRFLESTKD LPTIMTSNIH SLSTMMKCIA LGAVEFLQKP  120
LSDDKLKNIW QHVVRKAFNA GEKDVSESLK PVKESLVSTP QLERVKSAAD DKSSNEMEPF  180
TSAPDNNNEQ SSGCDKYPAP STPQLKQGLR SVDDGDCQDH TIFSTEQDSG EHDGDTKSVE  240
TTFNNTVAET TVQTSPPEQQ GQIIVKEENG SSPHQKMEAD IATSSPSNNC PDISSSHSAE  300
PSKASAPHSS SGTKTNKKKM KVDWSPELHK KFVQAVEQLG IDQAIPSRIL ELMKVEGITR  360
HNVASHLQEV ERRWRHPQPR DSVQRSCYPH HRPIMTFPPY HSNHVPAVGQ LHPAWVPPAS  420
YPNGLQVWGS PYYPAWQPAD SWHWNPHPGL HADTWGSPVM PPSFGSYPQN GGVYRPNGMH  480
NRYSMLEKSF DLHPAEEVID KVVEEAITKP WLPLPLGLKR PTTESVLHEL SRKGISTIPP  540
QINGSGCWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-13315369155ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784220.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
TrEMBLA0A1U7XCN50.0A0A1U7XCN5_NICSY; two-component response regulator-like APRR2 isoform X2
STRINGXP_009784214.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-122ARR-B family protein