PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02840g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 247aa    MW: 28597 Da    PI: 5.1429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02840g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.81.3e-3791271109
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeel+++yL+ ++++k++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWka
  Niben101Scf02840g00004.1   9 LPPGFRFHPTDEELIMYYLRYQATSKPCPV-SIIPEVDLYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKA 92 
                               79****************************.89***************99999******************************** PP

                       NAM  86 tgkdkevlskkgel...........vglkktLvfy 109
                               tg+dk+++s+++ l           + + kt+   
  Niben101Scf02840g00004.1  93 TGTDKAIYSASKYLddwvlcriykkKNMGKTMEMM 127
                               ********963332444444433334555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-445117IPR003441NAC domain
PROSITE profilePS5100536.5759153IPR003441NAC domain
PfamPF023658.5E-1610101IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVGKITSDLP PGFRFHPTDE ELIMYYLRYQ ATSKPCPVSI IPEVDLYKFD PWELPEKAEF  60
GENEWYFFTP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SASKYLDDWV LCRIYKKKNM  120
GKTMEMMKAE EEESEAQIEI TNNDIEVVGA TTSGPQTNKL PRNCSLSHLL ELNYFGSIPQ  180
LLGDNSYHTS FDNDQSYIMN NVNTNVVHQM EKSQLGEVSH QHNSQNNNYN IFFNQQPLFV  240
NPAFQFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-46811914170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773865.11e-163PREDICTED: NAC transcription factor 29-like
RefseqXP_016457734.11e-163PREDICTED: NAC transcription factor 29-like
SwissprotK4BWV21e-126NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A1S3YZW31e-161A0A1S3YZW3_TOBAC; NAC transcription factor 29-like
TrEMBLA0A1U7WI011e-161A0A1U7WI01_NICSY; NAC transcription factor 29-like
STRINGXP_009773865.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-70NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]