PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02849g09006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 155aa    MW: 17386.4 Da    PI: 10.0977
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02849g09006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-1653144298
                               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                        B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                               f  l+++ ++ s++l++  +fa+++ g+k +s +l+l+ +   sW+vk+  + ++ +  +++GW+eFv +n+Lk gD +vF+++g
  Niben101Scf02849g09006.1  53 FICLMQPTYT-SAILYVRLTFARKYFGEK-CS-KLVLRVPGRGSWSVKC--SLGQVQAKIKGGWREFVLDNKLKLGDACVFEVIG 132
                               5556555555.557***********7664.55.9***************..77777788***********************998 PP

                               SSEE..EEEEE- CS
                        B3  87 rsefelvvkvfr 98 
                                +     v++fr
  Niben101Scf02849g09006.1 133 GNPLFIDVTIFR 144
                               765557777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2345146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2146145IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.96951146IPR003340B3 DNA binding domain
CDDcd100172.44E-1651144No hitNo description
PfamPF023628.9E-1452144IPR003340B3 DNA binding domain
SMARTSM010193.3E-1452146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MCEASGKGCN TMFEQQSKTV YDVRKTVMPK LMDKEGAIAY QRAKAFKSKN PFFICLMQPT  60
YTSAILYVRL TFARKYFGEK CSKLVLRVPG RGSWSVKCSL GQVQAKIKGG WREFVLDNKL  120
KLGDACVFEV IGGNPLFIDV TIFRAAGSTP MRETD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-143314431141B3 domain-containing transcription factor VRN1
4i1k_B3e-143314431141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238608.11e-96PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLK4B6W51e-56K4B6W5_SOLLC; Uncharacterized protein
STRINGSolyc02g065310.1.12e-57(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-17related to vernalization1 1