PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02862g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 368aa    MW: 42430.4 Da    PI: 4.9473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02862g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.19.9e-55161451129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL+ k    ++e++ewyfFs+rdkky+tg+r+nrat +g+
  Niben101Scf02862g01006.1  16 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIRDIDLYRIEPWDLRdKcrIGYEEQNEWYFFSHRDKKYPTGTRTNRATVAGF 99 
                               69****************************.9***************843432233667************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk+v++ k +l+g++ktLvfykgrap+g+k+dW+mheyrle
  Niben101Scf02862g01006.1 100 WKATGRDKAVYD-KLKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 145
                               ************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6012165IPR003441NAC domain
PROSITE profilePS5100558.86416165IPR003441NAC domain
PfamPF023651.7E-2817144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
TKINRSEVMD TNESCVPPGF RFHPTDEELV GYYLRKKIAS QKIDLDVIRD IDLYRIEPWD  60
LRDKCRIGYE EQNEWYFFSH RDKKYPTGTR TNRATVAGFW KATGRDKAVY DKLKLIGMRK  120
TLVFYKGRAP NGQKSDWIMH EYRLESDENG PPQAKGWVVC RAFKKKITGQ TKTNMGEGWE  180
SNYFYEEATT AVSSVVDPLE YITRQPPPPN FMAQNLLCKQ EMELAENNNL NFAYSNSDQF  240
VQLPQLESPT LPLIKRPISS MSLVSENSNQ EDDEQTINRR CSTSQNVTGD WRALDKFVAA  300
QLSHDNHEQE STYEADHGLL SSFEEEARNY SDLGMLLLLS ERTEGPKLNE ILSSTSDDFD  360
TGVCIFDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-491617017170NO APICAL MERISTEM PROTEIN
1ut4_B1e-491617017170NO APICAL MERISTEM PROTEIN
1ut7_A1e-491617017170NO APICAL MERISTEM PROTEIN
1ut7_B1e-491617017170NO APICAL MERISTEM PROTEIN
4dul_A1e-491617017170NAC domain-containing protein 19
4dul_B1e-491617017170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782335.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_016469037.10.0PREDICTED: NAC domain-containing protein 37-like
SwissprotQ9SL411e-156NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A1S3ZXB20.0A0A1S3ZXB2_TOBAC; NAC domain-containing protein 37-like
TrEMBLA0A1U7X7710.0A0A1U7X771_NICSY; NAC domain-containing protein 7-like
STRINGXP_009782335.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-158vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]