PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02864g03015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 361aa MW: 39534.5 Da PI: 7.0088

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02864g03015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.4	7.5e-68	130	285	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelksk 81 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ +++++k kr+ + Niben101Scf02864g03015.1 130 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQRQERHdqlqldHNNNNKPKRQREDP 214 5789*************************************************999988877778888644444545555567 PP DUF702 82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+l +t+l+s++ + l++ ++P++vss+avf+c+++ss++d+e++laYq+av+ig hvfkGiLydqG+e+ Niben101Scf02864g03015.1 215 SASSLVCTRLPSNT--NGLDVGKFPAKVSSAAVFQCIQMSSIEDAEDQLAYQAAVNIGSHVFKGILYDQGPES 285 78889999999886..569999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-64	132	284	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	134	176	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.2E-24	235	283	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MANFFSLDGR GSSSQDQQQE ISSSHHHINN RPVPTEISAE SWFLNRNDHN QEMPTYKGFE 60 LWQSTTPQHQ PEQQQQQQQQ HQFCHPIYPL QDLYSTAVGL GVGPSQTGFD IFVGDQEASR 120 SGFVMMRSGG GGISCQDCGN QAKKDCQHMR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ 180 QQLSALQQQR QERHDQLQLD HNNNNKPKRQ REDPSASSLV CTRLPSNTNG LDVGKFPAKV 240 SSAAVFQCIQ MSSIEDAEDQ LAYQAAVNIG SHVFKGILYD QGPESEYNNN MAAAGDTSSG 300 GGSGSAAVPH HRNSAATSIF ASGGAAVAAE ASNFLDPSLF PAPLSTFMSA GTQFFPPPRS 360 P

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MANFFSLDGR GSSSQDQQQE ISSSHHHINN RPVPTEISAE SWFLNRNDHN QEMPTYKGFE  60
LWQSTTPQHQ PEQQQQQQQQ HQFCHPIYPL QDLYSTAVGL GVGPSQTGFD IFVGDQEASR  120
SGFVMMRSGG GGISCQDCGN QAKKDCQHMR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ  180
QQLSALQQQR QERHDQLQLD HNNNNKPKRQ REDPSASSLV CTRLPSNTNG LDVGKFPAKV  240
SSAAVFQCIQ MSSIEDAEDQ LAYQAAVNIG SHVFKGILYD QGPESEYNNN MAAAGDTSSG  300
GGSGSAAVPH HRNSAATSIF ASGGAAVAAE ASNFLDPSLF PAPLSTFMSA GTQFFPPPRS  360
P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	210	KPKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788499.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
Swissprot	K4B6C9	1e-158	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1U7XNI6	0.0	A0A1U7XNI6_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X2
STRING	XP_009788493.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-63	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]