PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02881g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 283aa    MW: 32064.8 Da    PI: 8.4443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02881g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08160209455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                               +h+ +Er RR +iN+++  L++++P +   ++   +  a +L + ++Y++sLq
  Niben101Scf02881g00009.1 160 SHSLAERVRRGKINERLRCLQDIVPGC---YKLQfMGMAVMLDEIINYVQSLQ 209
                               8*************************8...6666699*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.80E-9154213No hitNo description
Gene3DG3DSA:4.10.280.104.9E-14156221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.983156208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15156225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-5160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-8162214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAYQLNPNMQ INNPSFSVFN TDSSLNYNNQ FSQLNLNPTS LDMSNFNFQS FVGFSNENII  60
TQAPEFPVCL TKNFNGNFQE DDKNKVTIQA RNDINESKKK KTSETLESSS AYSSPAVSWS  120
GTKRKTSKGK GKRVKSDEKE EENTRQVVHV RAKRGQATDS HSLAERVRRG KINERLRCLQ  180
DIVPGCYKLQ FMGMAVMLDE IINYVQSLQN QVEFLSMKLS AASTYNNFNS ETDILETLQR  240
ANAYEANIMQ KLRKEGCEGL ASFNQIGPLD HSFGCYSQLS YNT
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257970.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK74e-55BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1J6HUX50.0A0A1J6HUX5_NICAT; Transcription factor bee 3
STRINGXP_009620411.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-55BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]