PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02881g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 310aa    MW: 35195.6 Da    PI: 8.0212
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02881g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.4e-5551311129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeel+++yL++kv++ ++++ +++++vd++k+ePwdLp+k++ +ekewyf+s +d+ky+tg r+nrat++gyWk+
  Niben101Scf02881g01001.1   5 LPPGFRFHPTDEELITFYLTNKVSDFSFSA-RAVADVDLNKCEPWDLPAKASMGEKEWYFYSLKDRKYPTGLRTNRATEAGYWKT 88 
                               79**************************99.88***************999999******************************* PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               tgkdke+++ +g +vg+kktLvfykgrapkgekt+Wvmheyrle
  Niben101Scf02881g01001.1  89 TGKDKEIFR-GGVVVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 131
                               *********.********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-643151IPR003441NAC domain
PROSITE profilePS5100559.1355151IPR003441NAC domain
PfamPF023659.9E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEEKLPPGFR FHPTDEELIT FYLTNKVSDF SFSARAVADV DLNKCEPWDL PAKASMGEKE  60
WYFYSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV VVGMKKTLVF YKGRAPKGEK  120
TNWVMHEYRL ETRLGFKPSK EEWVVCRVFQ KSSTVKKPQP TSSSPQSLES PNCNTNTIIT  180
SELGDIELPI NFNYLAATPS SGMISNNISL HNYNNENMNM NLASSLLNSS NLSSVNSLLF  240
RALQLRGYQP REATTTAQDY SFMPPIQGND FSFNFVDNIG AVPSSSMVFD NSVQQQQTQE  300
QPYKLDSNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-57515717171NO APICAL MERISTEM PROTEIN
1ut4_B3e-57515717171NO APICAL MERISTEM PROTEIN
1ut7_A3e-57515717171NO APICAL MERISTEM PROTEIN
1ut7_B3e-57515717171NO APICAL MERISTEM PROTEIN
4dul_A3e-57515717171NAC domain-containing protein 19
4dul_B3e-57515717171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433985.10.0PREDICTED: NAC domain-containing protein 100-like
TrEMBLA0A1S3X1W90.0A0A1S3X1W9_TOBAC; NAC domain-containing protein 100-like
STRINGXP_009779881.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-95NAC domain containing protein 58