PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02904g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 200aa    MW: 22554.3 Da    PI: 4.8163
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02904g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.99e-15711611128
                       NAM  11 deelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                               +e+l+  yL+k v g ++e  + i+++d y + +P +L     ++ +  yfF++ +kk+      nr +t  g Wk   ++k+v 
  Niben101Scf02904g00012.1   7 EEDLI-SYLQKFVCGMPIES-DGIRHIDGYgNKKPCELF----QNGEVNYFFTQLKKKS-----DNRsITGGGSWKGRDTSKPVR 80 
                               67888.9***********99.78****7662679****6....245667****999875.....4565999************** PP

                       NAM  94 skkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                               +k+g+++glkk++ f +     + ++  W m+ey l
  Niben101Scf02904g00012.1  81 DKEGSVIGLKKSFRFDEDiVIGSNQRIVWSMNEYCL 116
                               ***************975455666899*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.3071143IPR003441NAC domain
PfamPF023657.5E-96116IPR003441NAC domain
SuperFamilySSF1019414.32E-147142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MFQAYNEEDL ISYLQKFVCG MPIESDGIRH IDGYGNKKPC ELFQNGEVNY FFTQLKKKSD  60
NRSITGGGSW KGRDTSKPVR DKEGSVIGLK KSFRFDEDIV IGSNQRIVWS MNEYCLTDAT  120
LEVLRKHGQI RNEDSVLCSI EKKVSLCTIS QGIPTSSSAP IYCGSSLYTE LPPFDGPFES  180
LTEEELAFFD NPDPQAYTNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772253.11e-108PREDICTED: NAC domain-containing protein 2-like
RefseqXP_016500359.11e-108PREDICTED: NAC domain-containing protein 2-like
TrEMBLA0A1S4CH841e-107A0A1S4CH84_TOBAC; NAC domain-containing protein 2-like
TrEMBLA0A1U7W0W11e-107A0A1U7W0W1_NICSY; NAC domain-containing protein 2-like
STRINGXP_009772253.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-10NAC domain containing protein 2