PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02915g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 308aa    MW: 35013.9 Da    PI: 7.2644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02915g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-051702091255
                               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf02915g04003.1 170 RREKISKKMKCLQDLIPGC----NKVIGKAGMLDEIINYVQSLQ 209
                               ******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00152170213No hitNo description
SuperFamilySSF474597.72E-11171224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-13171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MLGCEEISIL ERQRAIFERL YQCQQQLSSL PNQNLTQFNS LISDHIMDCC QVQNFPIKID  60
PQMDENSPSL NMFGREQKNW AGSDFTNNSL QLAHQSLSTL SNSSIIKTST KKRKTEFYEE  120
DDCKARKLGV QAGEVKSEII MKSEKENSGN NSKENSKISE VKKPDYIHAR REKISKKMKC  180
LQDLIPGCNK VIGKAGMLDE IINYVQSLQK KVEFLSMKLA ASNLNIDNLF AKEFPSQMAN  240
FANPACLTNN LFQQQQQGSS IGVATMLPQR REDCLMSYPE AFLDSSHAVQ QLPNFENDLQ  300
CLFGIRFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253216.10.0PREDICTED: transcription factor BEE 2-like
TrEMBLA0A1J6IHP10.0A0A1J6IHP1_NICAT; Transcription factor bee 2
STRINGXP_009803326.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.17e-30BR enhanced expression 2