PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02917g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SAP

Protein Properties

Length: 366aa MW: 40795.5 Da PI: 8.0454

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02917g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	380.2	2.8e-116	88	366	172	455
SAP 172 vrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrW 256 v+lf+l++r+h+stf+pq rdrlGr+sravsGi + d ++vfa+ldGdihvavi g a+++rra+lGdvvndGalvdf+G++rW Niben101Scf02917g00005.1 88 VQLFHLQSRVHLSTFHPQFRDRLGRYSRAVSGINLFDESVVFASLDGDIHVAVIGG--ATPTRRAHLGDVVNDGALVDFTGCDRW 170 99**************************************************99..78********************* PP SAP 257 wvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeee 341 wvGlyaGvpGrafhiW++eteel++vGG lt+PeavmGWh+lteltelv v++ + ++ + + nqg++++e+++ Niben101Scf02917g00005.1 171 WVGLYAGVPGRAFHIWNSETEELIYVGGDLTNPEAVMGWHLLTELTELVP---VSGSR--LKTRPWHALDYASLNQGLIIQERSF 250 *******************************************974...66554..55678999999999******* PP SAP 342 rrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvn.ggyalvyaggvlrvWeiekkegylyslrer 424 ++ liv+s+da+ne +v+v+ +G+atv+rve+lee crf+vrg +qrgv+gC+n ggya++y ggv+rvW +++ + ylyslrer Niben101Scf02917g00005.1 251 QQALIVGSFDATNELLVAVNGQGIATVHRVEDLEEACRFNVRGaSQRGVVGCMNsGGYAVMYVGGVIRVWAVQTGV-YLYSLRER 334 ***************************************9******558************988.**** PP SAP 425 vgevnalv.addrhvavsssdgtihlldfgaq 455 + evna+v a++rh+ ++ssdgtihl+dfgaq Niben101Scf02917g00005.1 335 IREVNAIVlANERHILACSSDGTIHLWDFGAQ 366 **9869******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF50998	6.2E-10	115	363	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
Gene3D	G3DSA:2.130.10.10	8.5E-9	256	364	IPR015943	WD40/YVTN repeat-like-containing domain
PROSITE profile	PS50294	10.285	315	366	IPR017986	WD40-repeat-containing domain
PROSITE profile	PS50082	8.604	345	366	IPR001680	WD40 repeat
PROSITE pattern	PS00678	0	349	363	IPR019775	WD40 repeat, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MESSVTFRSS LAKYNPPNME PPPPSPPNMA RRIHILAPDL QQFPPTYVHL PHSPCCTCKQ 60 QRQQRRSFLP SSCIVRSPFS RRVLQRLVQL FHLQSRVHLS TFHPQFRDRL GRYSRAVSGI 120 NLFDESVVFA SLDGDIHVAV IGGATPTRRA HLGDVVNDGA LVDFTGCDRW WVGLYAGVPG 180 RAFHIWNSET EELIYVGGDL TNPEAVMGWH LLTELTELVP VSGSRLKTRP WHALDYASLN 240 QGLIIQERSF QQALIVGSFD ATNELLVAVN GQGIATVHRV EDLEEACRFN VRGASQRGVV 300 GCMNSGGYAV MYVGGVIRVW AVQTGVYLYS LRERIREVNA IVLANERHIL ACSSDGTIHL 360 WDFGAQ

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MESSVTFRSS LAKYNPPNME PPPPSPPNMA RRIHILAPDL QQFPPTYVHL PHSPCCTCKQ  60
QRQQRRSFLP SSCIVRSPFS RRVLQRLVQL FHLQSRVHLS TFHPQFRDRL GRYSRAVSGI  120
NLFDESVVFA SLDGDIHVAV IGGATPTRRA HLGDVVNDGA LVDFTGCDRW WVGLYAGVPG  180
RAFHIWNSET EELIYVGGDL TNPEAVMGWH LLTELTELVP VSGSRLKTRP WHALDYASLN  240
QGLIIQERSF QQALIVGSFD ATNELLVAVN GQGIATVHRV EDLEEACRFN VRGASQRGVV  300
GCMNSGGYAV MYVGGVIRVW AVQTGVYLYS LRERIREVNA IVLANERHIL ACSSDGTIHL  360
WDFGAQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251455.1	1e-164	PREDICTED: transcriptional regulator STERILE APETALA-like isoform X1
Swissprot	Q9FKH1	3e-95	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A1J6I500	1e-162	A0A1J6I500_NICAT; Transcriptional regulator sterile apetala
TrEMBL	A0A1S4B7T4	1e-162	A0A1S4B7T4_TOBAC; transcriptional regulator STERILE APETALA-like
TrEMBL	A0A1U7YNT0	1e-162	A0A1U7YNT0_NICSY; transcriptional regulator STERILE APETALA-like
STRING	XP_009803646.1	1e-163	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4099	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	3e-97	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]