PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02937g06003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 93aa    MW: 10695 Da    PI: 9.8541
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02937g06003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.7e-111155347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              rW+++E+  ++ + ++lG+g+W+ Ia+++   R   q+ s+ +ky
  Niben101Scf02937g06003.1 11 RWSEDEHRAFLIGLEKLGKGNWAGIAKEIVPSRAHTQVASHAHKY 55
                              9*****************************9************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.507460IPR017930Myb domain
SuperFamilySSF466896.39E-13760IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-13758IPR006447Myb domain, plants
SMARTSM007175.0E-6858IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-101056IPR009057Homeodomain-like
PfamPF002494.1E-91155IPR001005SANT/Myb domain
CDDcd001671.00E-51156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MGRRNSNKET RWSEDEHRAF LIGLEKLGKG NWAGIAKEIV PSRAHTQVAS HAHKYFERLE  60
AEKENERAVI KRQRSSVFDI NLAEESCRSS SPM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016442573.18e-52PREDICTED: myb-like protein J
SwissprotQ9FKF99e-20M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A1S3XRK02e-50A0A1S3XRK0_TOBAC; myb-like protein J
STRINGXP_009802911.17e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-22MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]