PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02947g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 133aa    MW: 15627.2 Da    PI: 10.3963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02947g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.32e-121296384
                       NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWk 84
                              +G+rFhP + el+ ++Lk+ ++g++l+ e   +++vdiy    Pw++  ++ ++ eek  yf ++ +k++++ +r +r+ + g  k
  Niben101Scf02947g00003.1 12 MGVRFHPIEAELI-NFLKRFLKGEPLPSEFPnFQHVDIYGDqPPWEIFgANSDHpEEKVRYFLTRLKKQKSEYTRVRRTCAMGHGK 96
                              7************.9**********7774445*******87368***733333324445599999999999999****88777544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-101094IPR003441NAC domain
PROSITE profilePS5100511.90810133IPR003441NAC domain
PfamPF023655.8E-512105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSSLPVRREC IMGVRFHPIE AELINFLKRF LKGEPLPSEF PNFQHVDIYG DQPPWEIFGA  60
NSDHPEEKVR YFLTRLKKQK SEYTRVRRTC AMGHGKSKPK VFLSRMAKEQ WLGLEEVSSF  120
KVVVKKERTI KFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801092.11e-54PREDICTED: NAC domain-containing protein 90-like
RefseqXP_016510918.11e-54PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A1S4DC453e-53A0A1S4DC45_TOBAC; NAC domain-containing protein 53-like
TrEMBLA0A1U7YAE33e-53A0A1U7YAE3_NICSY; NAC domain-containing protein 90-like
STRINGXP_009801092.16e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.18e-07NAC domain containing protein 52