PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02972g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 337aa    MW: 37934.8 Da    PI: 4.9647
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02972g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.5e-29109169259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v+eitY+g+H+++
  Niben101Scf02972g00004.1 109 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmqNCWTTKQVQRSDDDPTVFEITYKGSHTCP 169
                               8**************************99899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28105170IPR003657WRKY domain
SuperFamilySSF1182901.44E-25107170IPR003657WRKY domain
SMARTSM007749.1E-40108170IPR003657WRKY domain
PROSITE profilePS5081121.505109171IPR003657WRKY domain
PfamPF031061.3E-26109169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDCAFNWEYN TLINELTQGI EHTKQLRAYL RIASAEDSSC EQSLLILKCS GSAVQSPQPV  60
TPTCGTIESS VSVDGSPKSE DKKRSFKDHQ EVINISKKSA ETGFEGPTDD GYSWRKYGQK  120
DILGAKYPRS YYRCTYRHMQ NCWTTKQVQR SDDDPTVFEI TYKGSHTCPQ ATNSALQPKS  180
PENQEFKKQA NYQTGQYSNE VLMNLRANLR VDTNDLDKTE TTAACSFSFP PTFSSLADEN  240
RHFQISHVDE NLMIGGSYSP SFVSPTTPEL NYFSISSSCQ MNGFGMVHNV YRSESDLTDI  300
FSANTSSTSS PIVGSEFSLD HFELDPNFQF DNPRFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-19109168968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233122.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1J6KDX00.0A0A1J6KDX0_NICAT; Putative wrky transcription factor 53
STRINGXP_009768979.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-52WRKY family protein