PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02972g06009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 260aa MW: 28810.2 Da PI: 6.5079

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02972g06009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	47	108	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+C+ryWt+GG+lr +P+Ggg+rk+kksss Niben101Scf02972g06009.1 47 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCKRYWTEGGSLRSIPIGGGSRKSKKSSS 108 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	34	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	48	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.407	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDTAQWPQEI VVKPMEEIIP KNTNTITTIC SSKPSKHIER KIKPHQKDQA LNCPRCNSTN 60 TKFCYYNNYS LSQPRYFCKT CKRYWTEGGS LRSIPIGGGS RKSKKSSSAN CSSSNSVLRE 120 LSKNAAAPGL APPKIEGSQD LNLGFSCDFK TISELIQVPN NSFMPMPISD PNSVYSSLNF 180 SLDYGLGIGG DYENNLQDVQ ESTTSGRLLF PFEDLKQVSN TSIDGPEENR DEEAESSDSL 240 LFWVRKGGPT NIPLGTRAEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312609.1	1e-146	dof zinc finger protein DOF1.8-like
Refseq	XP_009788365.1	1e-146	PREDICTED: dof zinc finger protein DOF1.8-like
Swissprot	Q8LAP8	1e-46	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A0B6VI93	1e-144	A0A0B6VI93_TOBAC; Dof zinc finger protein
TrEMBL	A0A1U7XPF8	1e-144	A0A1U7XPF8_NICSY; dof zinc finger protein DOF1.8-like
STRING	XP_009788365.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-39	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]