PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02979g04005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 324aa    MW: 37308.1 Da    PI: 6.9101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02979g04005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1821.4e-56231491128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdee++++yL++kv +k++++  +i+evd++k+ePwdLp+k+k +ekewyfF +rd+ky+tg r+nrat+sgyWka
  Niben101Scf02979g04005.1  23 LPPGFRFHPTDEEIITCYLREKVMDKRFTA-ITIAEVDLNKSEPWDLPAKAKMGEKEWYFFWQRDRKYPTGMRTNRATESGYWKA 106
                               79*************************999.78***************99999******************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tgkdke+++ kg lvg+kktLvfykgrapkg+kt+Wvmheyrl
  Niben101Scf02979g04005.1 107 TGKDKEIYKVKGCLVGMKKTLVFYKGRAPKGKKTSWVMHEYRL 149
                               *****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-5820154IPR003441NAC domain
PROSITE profilePS5100553.08523177IPR003441NAC domain
PfamPF023659.9E-2924149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDTNSMQVIN QEADLHRDDI LYLPPGFRFH PTDEEIITCY LREKVMDKRF TAITIAEVDL  60
NKSEPWDLPA KAKMGEKEWY FFWQRDRKYP TGMRTNRATE SGYWKATGKD KEIYKVKGCL  120
VGMKKTLVFY KGRAPKGKKT SWVMHEYRLH GKLSFHKPAM NIGVRRGSLL MEDLLDSPSS  180
LPCLIEIPKS SDELNVKAAP TISTFDDIHS SAYFSTAIFN NYAYEQQQQQ LLREDEKSYG  240
LFVPTHYIFT DIHDYEHNNQ FASSSNSSFN HHQSLPPNSK ISDCGTALER QQKSMISLSQ  300
DTNEISSVIP NSTIAADLDS IWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-492114915142NO APICAL MERISTEM PROTEIN
1ut4_B3e-492114915142NO APICAL MERISTEM PROTEIN
1ut7_A3e-492114915142NO APICAL MERISTEM PROTEIN
1ut7_B3e-492114915142NO APICAL MERISTEM PROTEIN
3swm_A3e-492114918145NAC domain-containing protein 19
3swm_B3e-492114918145NAC domain-containing protein 19
3swm_C3e-492114918145NAC domain-containing protein 19
3swm_D3e-492114918145NAC domain-containing protein 19
3swp_A3e-492114918145NAC domain-containing protein 19
3swp_B3e-492114918145NAC domain-containing protein 19
3swp_C3e-492114918145NAC domain-containing protein 19
3swp_D3e-492114918145NAC domain-containing protein 19
4dul_A3e-492114915142NAC domain-containing protein 19
4dul_B3e-492114915142NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786013.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A1U7X5920.0A0A1U7X592_NICSY; protein CUP-SHAPED COTYLEDON 1-like
STRINGXP_009786013.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-84Arabidopsis NAC domain containing protein 87