PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02992g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 109aa    MW: 12433.2 Da    PI: 4.8368
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02992g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.3e-20943135
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35
                              k+i+n + rqvtfskRr g++KKAeELSvLCda++
  Niben101Scf02992g01001.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADA 43
                              68******************************985 PP
2K-box41.45.9e-15451033997
                     K-box  39 lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                                Ge+L+ Ls++eLqqLe+ Le +l+++ + K + ++++i++lq+k  +l een++L+++
  Niben101Scf02992g01001.1  45 EGEELQGLSIEELQQLERCLEAGLTRVIEGKGDKIMTEINQLQQKGMQLMEENERLKQQ 103
                               5*******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-21155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.203142IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-19143IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-15323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-181043IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.05714109IPR002487Transcription factor, K-box
PRINTSPR004046.3E-152338IPR002100Transcription factor, MADS-box
PfamPF014869.7E-1346103IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADANEGEELQ GLSIEELQQL  60
ERCLEAGLTR VIEGKGDKIM TEINQLQQKG MQLMEENERL KQQGDGDIQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887238.13e-37MADS-box protein JOINTLESS-like
SwissprotQ9FUY62e-24JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A199VXJ57e-31A0A199VXJ5_ANACO; MADS-box transcription factor 22 (Fragment)
STRINGVIT_18s0001g07460.t012e-28(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.26e-32MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]