PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03004g02017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 473aa    MW: 53182.6 Da    PI: 7.2934
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03004g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.11.4e-1356122274
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                               fYn+YA++vGFs+r+s+s++s+++g +++r  + +++ ++++      + +r+r+ tr+gCka l vk +++g
  Niben101Scf03004g02017.1  56 FYNSYARRVGFSTRVSSSRRSRKDGAVIQRIPQLNEKRTKDR------EIKRPRTITRVGCKAALSVKIQDSG 122
                               9************************99999766555544444......4567****************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1156122IPR004330FAR1 DNA binding domain
PfamPF044346.8E-13285331IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.288297333IPR007527Zinc finger, SWIM-type
SMARTSM005755.5E-10308335IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
LGGGGGSEDG DGDDVLDEEN VASCFAAVRS YFPKGDLDLE PYEGMEFESE EAAKAFYNSY  60
ARRVGFSTRV SSSRRSRKDG AVIQRIPQLN EKRTKDREIK RPRTITRVGC KAALSVKIQD  120
SGTLSPLHRQ ISGPAKTLID TLQAAGMGPR RIMSALIKEY GVLAKLIADS GSLYISMMHF  180
FAEMSITQRS DSMNSHFDGY VNASTNLNQF FKLYEKVVES RTEKEVKADY DTMNTFPVLK  240
TPSPMEKQAS EVYTRKLFMR FQEELVGTLT FMANKVEDDG LVTTYQVAKF GDDHRAYYVR  300
FNVLEMKATC SCQMFQFSGL LCRHILAVFR VTNVLTLPSH YILKLWSRSA KSSVALDDRV  360
SDVINYYLES HTVRYNILRH EAFKFVEEGA ESVDSYAVAM AALEVALNKV ALAAKHDGRI  420
SLVNGHCREY LTRNGVHANY NIEDEQRSLA CPLSENMIPN CSLVLQALLL YFI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263777.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_019263778.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL81e-114FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3ZA490.0A0A1S3ZA49_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7V9U10.0A0A1U7V9U1_NICSY; protein FAR1-RELATED SEQUENCE 5
STRINGXP_009758605.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]