PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03009g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 330aa    MW: 36944.9 Da    PI: 9.9418
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03009g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.3e-31259316359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh+
  Niben101Scf03009g03002.1 259 DDYSWRKYGQKPIKGSPHPRAYYKCSSVrGCPARKHVERALDEPTMLIVTYEGEHNHS 316
                               99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.4E-14209255IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-33244316IPR003657WRKY domain
PROSITE profilePS5081130.205252318IPR003657WRKY domain
SuperFamilySSF1182909.68E-27254316IPR003657WRKY domain
SMARTSM007742.4E-37257317IPR003657WRKY domain
PfamPF031068.9E-27259315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAVELIMDYR NTSRNNFTIF NTKLEEKAVV QEAAFGLESV EKFLKLLSQT QSQQNQGNLS  60
SFLKQENSPM DIEMAADAAV TKFKNVISLL GRTRTGHARF RRAPTTSPSK VKKDFIDSNV  120
YCPTPIQQVP PPIAYELYNH QLFQNPRDGV VENQESVTKK SMNFSYGQDI SRSNSFNMST  180
LTRETESSSF KISNLSSAGK PPLSTSSLKT KCCSSENGLS GKCSGSSGRC RCSKRRKLRL  240
KRVERVPAIS MKMSDIPPDD YSWRKYGQKP IKGSPHPRAY YKCSSVRGCP ARKHVERALD  300
EPTMLIVTYE GEHNHSLSVA ETSSLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21245317273WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241749.10.0PREDICTED: probable WRKY transcription factor 15
TrEMBLA0A1U7YR430.0A0A1U7YR43_NICSY; probable WRKY transcription factor 15
STRINGXP_009804436.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.17e-68WRKY DNA-binding protein 7