PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03021g03026.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26133.1 Da    PI: 9.7109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03021g03026.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1987140356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t++q++ Le+ F +++++  e++ +LAk+lgL+ rq+ +WFqNrRa++k
  Niben101Scf03021g03026.1  87 KKRRLTENQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 140
                               56689************************************************9 PP
2HD-ZIP_I/II128.52.8e-4186177192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+++qv++LE+sF ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEk++e L+++yd+lk++ ++L ke+e
  Niben101Scf03021g03026.1  86 EKKRRLTENQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKEFEELRNQYDNLKSDYNNLLKEKE 170
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +Lr+e+ 
  Niben101Scf03021g03026.1 171 NLRAEVF 177
                               ***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-2077144IPR009057Homeodomain-like
PROSITE profilePS5007117.68682142IPR001356Homeobox domain
SMARTSM003891.2E-1885146IPR001356Homeobox domain
CDDcd000862.05E-1587143No hitNo description
PfamPF000469.2E-1787140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1992141IPR009057Homeodomain-like
PRINTSPR000313.5E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6122138IPR000047Helix-turn-helix motif
PfamPF021831.7E-13142183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLYSGGSGAF NFDGALIQKQ RVMSSSSTVK EHIGSLFVPG CSSSYLGSSS MVSFGRVNGG  60
KRLFFDSFDQ EENEADELGE YFHQSEKKRR LTENQVQFLE KSFGEENKLE PERKVQLAKE  120
LGLQPRQIAI WFQNRRARWK TKQLEKEFEE LRNQYDNLKS DYNNLLKEKE NLRAEVFQLT  180
DKLLLKERKN GQLTLPDFQK HSDASPKETK ADPISRXVRH NRKLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773747.11e-136PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_016461905.11e-136PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ6ZA745e-40HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
SwissprotQ9XH365e-40HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLA0A1S3ZBS71e-135A0A1S3ZBS7_TOBAC; homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1U7W1391e-135A0A1U7W139_NICSY; homeobox-leucine zipper protein HAT5-like
STRINGXP_009773747.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-41homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]