PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03048g05006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21123.7 Da    PI: 4.7309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03048g05006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121660145
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              +rien   r++tfskRr g+ KKA+ L   C++++ + +fs+ g+
  Niben101Scf03048g05006.1 16 ERIENPEDRYTTFSKRRSGLYKKASNLVEECGVDIGIALFSPAGN 60
                              69****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.021868IPR002100Transcription factor, MADS-box
SMARTSM004329.5E-14867IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-17975IPR002100Transcription factor, MADS-box
CDDcd001201.49E-20967No hitNo description
PRINTSPR004041.7E-101030IPR002100Transcription factor, MADS-box
PfamPF003194.0E-181764IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-103045IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-104566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDKEKKTEGR QSIPMERIEN PEDRYTTFSK RRSGLYKKAS NLVEECGVDI GIALFSPAGN  60
PFSFFHPTPN IFLDLVENPN IELSESTKLV AAYTRNNVNQ MNNRINEIET IEEAAKSKML  120
LLEQLNKTRQ MDSQESIDQF KADDITKYES WLKGVVFGLE NRLKQLENGA SSSAQAPPDN  180
SPCASNE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801171.11e-127PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016479567.11e-127PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4AS501e-125A0A1S4AS50_TOBAC; agamous-like MADS-box protein AGL61
TrEMBLA0A1U7YGV71e-125A0A1U7YGV7_NICSY; agamous-like MADS-box protein AGL61
STRINGXP_009801171.11e-126(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22AGAMOUS-like 61