PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03072g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24388.5 Da    PI: 6.5343
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03072g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1952104456
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               ++++++eq++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Niben101Scf03072g00004.1  52 KRKLKDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 104
                               458899**********************************************9 PP
2HD-ZIP_I/II119.71.5e-3851142293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+l++eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+ + e++rLe+ev +
  Niben101Scf03072g00004.1  51 RKRKLKDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSDHDTNVVEKCRLESEVLK 135
                               8************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelke 93 
                               L+++l+e
  Niben101Scf03072g00004.1 136 LKDQLSE 142
                               ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.69846106IPR001356Homeobox domain
SMARTSM003894.9E-1849110IPR001356Homeobox domain
SuperFamilySSF466895.13E-1851116IPR009057Homeodomain-like
CDDcd000862.19E-1651107No hitNo description
PfamPF000469.0E-1752104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-2053113IPR009057Homeodomain-like
PRINTSPR000318.4E-67786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000318.4E-686102IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNHQVVADEM VLISQYYPDI YTQLVPQQGE SKPRRRRKKK QGEGNGSGVM RKRKLKDEQV  60
NLLEQSFGNE HKLESERKDK LASELGLDPR QVAVWFQNRR ARWKSKKLEE EYSKLKSDHD  120
TNVVEKCRLE SEVLKLKDQL SEAEKEIHRL LLERCDGVSS NNSPSTSSFS MEAAMEPPFL  180
GEFGMDGLDN MFYTPDNTYV QGLDWVNLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13339RRRRKKK
23455RRRKKKQGEGNGSGVMRKRKLK
33753KKKQGEGNGSGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590483.11e-132PREDICTED: homeobox-leucine zipper protein ATHB-40
RefseqXP_016433151.11e-132PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU707e-81ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A1S3X0371e-131A0A1S3X037_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009590483.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-68homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]