PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03080g01015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 398aa    MW: 44250.3 Da    PI: 9.2935
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03080g01015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.94.7e-33257312156
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Niben101Scf03080g01015.1 257 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 312
                               79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.999254314IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-30255316IPR009057Homeodomain-like
SuperFamilySSF466893.07E-18255315IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-27257312IPR006447Myb domain, plants
PfamPF002494.9E-8259310IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGSIPPELSL DCRPTFIPTS ITDFLKQLSS IRNVPDKLAQ IDDYISRLED EMRKIDAFKR  60
ELPLSVLLVK DAIVALRAES VQYKKSRTEP VLEEFIPLKK SSNEDNKAEV TKDEDNSREK  120
MSWMSSVQLW NGDQNTNEAS NKQQSKSELK IRSPEEGNSS VTEDRFQSCK TLNIGKAFSP  180
FKGYSGFSVT TVRKDNKDEL SGVPGLSLHT PGIIKLREDT SGLNSKHNGN RGGLSSVASS  240
QSNIRNGSLS QRQAARKQRR CWSPELHRRF VDALQQLGGS QVATPKQIRE LMQVDGLTND  300
EVKSHLQKYR LHTRRIPNTQ TQPANQSGVA LWMSQDQYGG SSKQSSSQSG SPQGPLHLSG  360
SSRGTSTTVG DSMEEEDDVK SESQSWKNHA HMSGKIDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-14257310154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774094.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_016443900.10.0PREDICTED: two-component response regulator-like APRR2
TrEMBLA0A1S3XVJ90.0A0A1S3XVJ9_TOBAC; two-component response regulator-like APRR2
TrEMBLA0A1U7WHH60.0A0A1U7WHH6_NICSY; two-component response regulator-like APRR2
STRINGXP_009774094.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.13e-54G2-like family protein