PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03099g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 121aa    MW: 13548.8 Da    PI: 10.6275
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03099g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-092670147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+ T+eE+ l + + +++G++ Wk+Ia +++ g t+k +  +w  +
  Niben101Scf03099g04004.1 26 KGSLTPEEQNLVIPLQAKYGNK-WKKIATEVP-GCTAKRLGKWWEVF 70
                              6788******************.*********.99999988888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.101120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-7631IPR009057Homeodomain-like
SuperFamilySSF466892.81E-15678IPR009057Homeodomain-like
PROSITE profilePS5129419.3562175IPR017930Myb domain
SMARTSM007173.7E-52573IPR001005SANT/Myb domain
PfamPF002491.7E-72667IPR001005SANT/Myb domain
CDDcd001676.84E-53071No hitNo description
Gene3DG3DSA:1.10.10.602.0E-93275IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MGKTLDRDPK ACFERWKNYL KPGIKKGSLT PEEQNLVIPL QAKYGNKWKK IATEVPGCTA  60
KRLGKWWEVF KEKQLKQLQK SRKLQDYADQ PSISTVSCGG SPEGAVSGKA KNSRARGLSL  120
L
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784773.12e-63PREDICTED: protein rough sheath 2 homolog
RefseqXP_016442099.12e-63PREDICTED: protein rough sheath 2 homolog
SwissprotQ9S7B21e-36RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A1S3XQD94e-62A0A1S3XQD9_TOBAC; protein rough sheath 2 homolog
TrEMBLA0A1U7X1R34e-62A0A1U7X1R3_NICSY; protein rough sheath 2 homolog
STRINGXP_009784773.17e-63(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29332445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.12e-36MYB family protein