PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03143g11021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 222aa MW: 24656.1 Da PI: 9.7812

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03143g11021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	20.4	1.2e-06	89	106	38	55
G2-like 38 vkgLtlehvkSHLQkYRl 55 +gLt+e++ SHLQkYRl Niben101Scf03143g11021.1 89 RDGLTRENMVSHLQKYRL 106 58***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-6	90	111	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MPLSQTLITP GLTLSFDIKN PSSPLPKTHH QQLQQSTLPV GVHAPSSHPN SSPEFDSAEL 60 GGTAGSGGID EPAPTFKRPR LVWTHSSTRD GLTRENMVSH LQKYRLYLKR MQGLSNGGSG 120 NYMPFVPVST MQHHHQMAAV VGQPPQLQQQ YRHFGSPPNR QFEVPFLSRQ LQQQVRRMGT 180 SVHSSSPMVP SYAEIWNQLQ LLMGEKFLLC LQLGVIDIQG NC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790047.1	9e-97	PREDICTED: transcription factor PCL1-like
Refseq	XP_016480389.1	9e-97	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	1e-16	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A1S4AUN4	2e-95	A0A1S4AUN4_TOBAC; transcription factor PCL1-like
TrEMBL	A0A1U7XDB2	2e-95	A0A1U7XDB2_NICSY; transcription factor PCL1-like
STRING	XP_009790047.1	4e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2432	23	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	4e-25	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]