PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03145g01006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 239aa MW: 27881.3 Da PI: 6.049

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03145g01006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.5e-16	23	68	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT eEd ll++++ G g+W++ a++ g++Rt+k+c++rw k Niben101Scf03145g01006.1 23 RGPWTLEEDNLLIHYISTNGEGRWNALAKCAGLKRTGKSCRLRWSK 68 89******************************************65 PP
2	Myb_DNA-binding	29.5	1.7e-09	65	87	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ Niben101Scf03145g01006.1 65 RWSKIAQHLP-GRTDNEIKNYWRT 87 4*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.466	18	74	IPR017930	Myb domain
SuperFamily	SSF46689	1.84E-18	20	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-17	21	66	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	22	91	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	23	67	IPR001005	SANT/Myb domain
CDD	cd00167	3.22E-10	25	87	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-11	67	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSKNIVIMSN NSSNEDDQFE LRRGPWTLEE DNLLIHYIST NGEGRWNALA KCAGLKRTGK 60 SCRLRWSKIA QHLPGRTDNE IKNYWRTRVQ KQARQLKVDC NSKKFVEAIK SLWVPRLLEK 120 MEQSSSIEKH NPSLLTPLIN NQESYDKENS KMYSTDSMNI LKSQPDEMTQ DFTIYNNSVQ 180 NECYHVESIS QQPKFSSQEL SISECEVAEA HWFSDEMAAA SLWNMDEFWQ FRKLGDIDI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269\|PubMed:19529828}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19529828}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256818.1	1e-164	PREDICTED: transcription factor MYB108-like
Swissprot	Q9C9G7	3e-58	MYB62_ARATH; Transcription factor MYB62
TrEMBL	A0A1J6I9Z5	1e-163	A0A1J6I9Z5_NICAT; Transcription factor myb108
STRING	XP_009797951.1	1e-163	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	1e-60	myb domain protein 62

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]