PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03150g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 260aa    MW: 29030.5 Da    PI: 9.1433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03150g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05108127120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++C  C+k+F+r  n++ H+
  Niben101Scf03150g05001.1 108 FSCAVCNKTFNRFNNMQMHM 127
                               89*****************9 PP
2zf-C2H215.84.1e-05193215123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C +Cgk F  + + ++H +++
  Niben101Scf03150g05001.1 193 FTCRKCGKNFAVRGDWRTHEKNC 215
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-5105129No hitNo description
Gene3DG3DSA:3.30.160.602.6E-5108127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM00355180156188IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.52E-6179213No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5179213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035555193213IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663193213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQTHSITYLS SSESGCLETE VEDELSTVLS LGPPGQKNTT KFHFQSYYNQ YSSYGEGVTA  60
ALHTDSSGTS SNNNNPSKNK GGDIVSVANN GQYWIPTPAQ ILVGPTQFSC AVCNKTFNRF  120
NNMQMHMWGH GSQYRKGPDS LKGTKPASSM LRFPCYCCAE GCKNNIEHPR SKPLKDFRTL  180
QTHYKRKHGA KPFTCRKCGK NFAVRGDWRT HEKNCGKLWF CICGSDFKHK RSLKDHVRAF  240
GDGHAPHKGN LDDELYGNGT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236543.11e-179PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-115ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1S3X8B91e-167A0A1S3X8B9_TOBAC; zinc finger protein WIP6-like
TrEMBLA0A1U7Y1321e-167A0A1U7Y132_NICSY; protein TRANSPARENT TESTA 1
STRINGXP_009796838.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-115C2H2-like zinc finger protein