PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03164g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 624aa    MW: 68161.9 Da    PI: 8.0193
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03164g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14142181242
                       TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                               + k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  Niben101Scf03164g05001.1 142 KPKQCNCKHSRCLKLYCECFASGIYCDG-CNCANCHNNVEN 181
                               5699************************.********9875 PP
2TCR50.83.3e-16226265140
                       TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                               k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Niben101Scf03164g05001.1 226 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 265
                               589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-15141181IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.406142266IPR005172CRC domain
PfamPF036381.3E-11144178IPR005172CRC domain
SMARTSM011148.4E-20226267IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12229264IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEKSERGDFP PKKAQSEPKA TAASAHVVTD YPAKKLARQL DFTGFGGAAA ADLPEQAKQV  60
QQQVMKSGHL PVSMKSTQMT RPQLQTQAQA LPQSQQHHIL LMPMQQTPVQ PTHPSIRPVK  120
PESPKARSRQ SDNEAKDGTP KKPKQCNCKH SRCLKLYCEC FASGIYCDGC NCANCHNNVE  180
NEPARREAVE ATLERNPHAF RPKIASSPHG VRENREEAGD GLLLPKHNKG CHCKKSGCLK  240
KYCECFQANI LCSENCKCMD CKNFEGSQER QALFHGDHAN NMAYLQQAAN TAITGAIGSS  300
GYGSPPVNKK RKAQELFFGS MIKDPVHRPG QLQQESQIKA SVPPSPLSSI PGPRVGNAAA  360
LGPSKFTYRS LLADLIHPHD IKELCSVLVD YAWEAGKMLA DERDASQKQV KCHSEASYPA  420
SGVEKVIPDD YSSAVRAENM DESSLDSANV PEERPMSPGT LALMCDEQNT ILTAAAAPPN  480
DRTSLSNNTS SQLPYGQGMK EVTPELEKIV LTQTRDCLKK LITLGELKET KCSSMVRGAD  540
SGRQNEVNGN GIAMTDSRNQ HEPFRNSLAN SVPTPPPSQK VEPGTTVFSN NSCPKVHPPD  600
ENGYFVFDAV QGCFRPHLLE ARTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3114027510132Protein lin-54 homolog
5fd3_B2e-3114027510132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595592.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-173TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7VWI30.0A0A1U7VWI3_NICSY; protein tesmin/TSO1-like CXC 5 isoform X1
STRINGXP_009766310.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-171Tesmin/TSO1-like CXC domain-containing protein