PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03213g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 161aa    MW: 18560.3 Da    PI: 9.0395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03213g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001880102123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ Cg+ Fs   +L  H+r+H
  Niben101Scf03213g02008.1  80 HECSFCGEEFSLGQDLGGHMRKH 102
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-835102No hitNo description
PROSITE profilePS501579.3493764IPR007087Zinc finger, C2H2
PfamPF139124.3E-113760IPR007087Zinc finger, C2H2
SMARTSM003550.583759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-478103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.05580107IPR007087Zinc finger, C2H2
PfamPF139125.3E-880105IPR007087Zinc finger, C2H2
SMARTSM003550.09280102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTLKRSREEE SISVEKLAMA NCADIMKRNQ SLGRKIFECK TCKKQFDSFQ ALGGHRASHK  60
NTANKLMMTL LTIPIEPKKH ECSFCGEEFS LGQDLGGHMR KHRDQLNQLQ HKKTKFQEKS  120
DESDQQAIKE KKHNLNSERI LFFDLNLTAY ENELMAGLTS I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801628.11e-105PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A1U7YER21e-103A0A1U7YER2_NICSY; zinc finger protein ZAT12-like
STRINGXP_009801628.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-29C2H2 family protein