PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03221g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 66aa    MW: 7478.66 Da    PI: 10.7674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03221g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-092661138
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                              +g+ T+eE+ l + + + +G++ Wk+I +++  gRt+k
  Niben101Scf03221g02010.1 26 KGSLTPEEQNLAISLQANYGNK-WKKIGAEVS-GRTAK 61
                              6788******************.*********.***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-4620IPR009057Homeodomain-like
SuperFamilySSF466891.4E-14661IPR009057Homeodomain-like
PROSITE profilePS5129416.0242166IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-132162IPR009057Homeodomain-like
PfamPF002492.8E-72661IPR001005SANT/Myb domain
CDDcd001670.001193061No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MGKTLDRDSK SCLERWKNYL KPGIKKGSLT PEEQNLAISL QANYGNKWKK IGAEVSGRTA  60
KRLGKW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784773.12e-35PREDICTED: protein rough sheath 2 homolog
RefseqXP_016442099.12e-35PREDICTED: protein rough sheath 2 homolog
RefseqXP_019262167.12e-35PREDICTED: transcription factor AS1-like
SwissprotQ9S7B22e-30RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A1S3XQD95e-34A0A1S3XQD9_TOBAC; protein rough sheath 2 homolog
TrEMBLA0A1U7X1R35e-34A0A1U7X1R3_NICSY; protein rough sheath 2 homolog
TrEMBLA0A314LB435e-34A0A314LB43_NICAT; Transcription factor as1
STRINGXP_009784773.19e-35(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29332445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-32MYB family protein