PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03223g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 139aa    MW: 15802.9 Da    PI: 10.1637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03223g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-181764255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               y+G+r +k +g+WvAeIr+p     +kr++lg++ ++  Aa+a++ a+  l+g
  Niben101Scf03223g00002.1 17 PYRGIRKRK-WGKWVAEIREP-----NKRIWLGSYSSPLAAARAYDTAAFHLRG 64
                              69****999.**********9.....8************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-201773IPR016177DNA-binding domain
PROSITE profilePS5103222.3791772IPR001471AP2/ERF domain
SMARTSM003806.7E-331778IPR001471AP2/ERF domain
PRINTSPR003673.8E-131829IPR001471AP2/ERF domain
PfamPF008474.2E-111864IPR001471AP2/ERF domain
CDDcd000181.42E-161872No hitNo description
Gene3DG3DSA:3.30.730.102.7E-281873IPR001471AP2/ERF domain
PRINTSPR003673.8E-135474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEGGSCCSRQ NRQQDKPYRG IRKRKWGKWV AEIREPNKRI WLGSYSSPLA AARAYDTAAF  60
HLRGPSAKLN FPQFIVNNEN HQLHNQLSAS DIRKKATQVG AKVNAMLQIA TSSTESSWLS  120
MKPDLNEYPT PETWEELAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-161479270ATERF1
3gcc_A2e-161479270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793053.12e-90PREDICTED: ethylene-responsive transcription factor RAP2-1-like
RefseqXP_016456981.12e-90PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC309e-42RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A1S3YXC84e-89A0A1S3YXC8_TOBAC; ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A1U7XQ944e-89A0A1U7XQ94_NICSY; ethylene-responsive transcription factor RAP2-1-like
STRINGXP_009793053.17e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.14e-44related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]