PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03240g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 635aa    MW: 71207.1 Da    PI: 4.3477
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03240g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS114.41.5e-351142432139
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fs 85 
                               v+ L++c eav+ ++l+la++l+  ++e+a ++  +m+++a+yf+ AL +r+++   +l ++++ s  ++     +  ++++ ++
  Niben101Scf03240g00008.1 114 VKILVACGEAVQRNNLNLADSLVRLIREQAVSQFGAMKKVATYFADALDQRIQG--RNLEDIMEFSCYRD-----N--VMQMrLH 189
                               789**************************************************9..66666666666652.....2..2223399 PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139
                               e+ P+l+f++ taN+aIl+a+++++rvHiiDf+++qG QW+aL+q +a Rp+gp
  Niben101Scf03240g00008.1 190 EIRPYLEFAYSTANRAILDAFANSSRVHIIDFSLNQGPQWLALMQDFALRPGGP 243
                               ***************************************************997 PP
2GRAS240.19.5e-74242491122374
                      GRAS 122 GlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaV 204
                               G QW+aL+q +a Rp+gpp +R+Tg+gsp+  ++++l++++++L++fA+ +g++fef  +++++l+d+++++L+++p   E +aV
  Niben101Scf03240g00008.1 242 GPQWLALMQDFALRPGGPPAIRLTGIGSPD--NTDALRQLKWKLTEFADIFGIEFEFCGIMVDSLADVDTSRLDIRPsnYEEVAV 324
                               78**************************76..9********************************************999***** PP

                      GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..lpres.eerikvE 286
                               n++++lh+ll  ++++e+    vL+ +k++ Pk+v+++e+ea+   + F++rf +a +yys++fdsle++   p ++   ++ + 
  Niben101Scf03240g00008.1 325 NSIFELHHLLYTPGEIEK----VLNSIKEMHPKIVTIIEEEANQ--SVFMDRFNDAWSYYSKVFDSLENSesTPDQHnTGDSRLV 403
                               **********99999999....*******************975..9********************655225555454455566 PP

                      GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                               +e+lg++i n+vace +  +  ++tl++Wr ++++aGF+pv+l+ +++ qa ++l+ ++ ++gyrve+++g+l+l W++rpL+s+
  Niben101Scf03240g00008.1 404 HEYLGQQINNMVACELRT-ELVETTLSEWRVKMNSAGFNPVQLGPSMYLQATMILALFQnKNGYRVEKNDGCLTLSWHGRPLIST 487
                               667************998.6666789*********************************************************** PP

                      GRAS 371 SaWr 374
                               S+W+
  Niben101Scf03240g00008.1 488 SVWQ 491
                               ***6 PP
3GRAS102.75.2e-32499628248374
                      GRAS 248 hnsesFlerflealeyysalfdsleak..lpres.eerikvErellgreivnvvacegaerrerhe.tlekWrerleeaGFkpvp 328
                                n++ F++rf +a +yys++fdsle++   p ++   ++ + +++lg++i n+vace +   er e  l++Wr ++++aGF+ v+
  Niben101Scf03240g00008.1 499 ANQSVFMDRFNDAWSYYSKMFDSLENSesTPDQHnTGDSRLVHQYLGQQINNIVACELQT--ERVEmMLSEWRVKMNSAGFNLVQ 581
                               6999********************655225555454445555666************998..555513799************** PP

                      GRAS 329 lsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               l+ +++ qa ++l+ ++  dgyrve+++g++ l W++ pL+s+S+W+
  Niben101Scf03240g00008.1 582 LGPSTYLQATMILASFQnRDGYRVEQNDGCIKLSWHGCPLISTSVWQ 628
                               **********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.48487470IPR005202Transcription factor GRAS
PfamPF035143.3E-71242491IPR005202Transcription factor GRAS
PROSITE profilePS509859.068482607IPR005202Transcription factor GRAS
PfamPF035141.8E-29499628IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MSSGNLSTDT FMEDGESFVS NTDAIISGIS DISDLTLSLI SDPNIPNSSD SSTSIDDHLQ  60
QILTAACGCD DMIVDKVAEE GSAESSNRMR SEDGLELCLG LSIGSEAVNE ELIVKILVAC  120
GEAVQRNNLN LADSLVRLIR EQAVSQFGAM KKVATYFADA LDQRIQGRNL EDIMEFSCYR  180
DNVMQMRLHE IRPYLEFAYS TANRAILDAF ANSSRVHIID FSLNQGPQWL ALMQDFALRP  240
GGPQWLALMQ DFALRPGGPP AIRLTGIGSP DNTDALRQLK WKLTEFADIF GIEFEFCGIM  300
VDSLADVDTS RLDIRPSNYE EVAVNSIFEL HHLLYTPGEI EKVLNSIKEM HPKIVTIIEE  360
EANQSVFMDR FNDAWSYYSK VFDSLENSES TPDQHNTGDS RLVHEYLGQQ INNMVACELR  420
TELVETTLSE WRVKMNSAGF NPVQLGPSMY LQATMILALF QNKNGYRVEK NDGCLTLSWH  480
GRPLISTSVW QLTPPPKEAN QSVFMDRFND AWSYYSKMFD SLENSESTPD QHNTGDSRLV  540
HQYLGQQINN IVACELQTER VEMMLSEWRV KMNSAGFNLV QLGPSTYLQA TMILASFQNR  600
DGYRVEQNDG CIKLSWHGCP LISTSVWQLT PPSLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4912063326382Protein SCARECROW
5b3h_A1e-4912063325381Protein SCARECROW
5b3h_D1e-4912063325381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241513.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ7Y1B61e-134GAI_SOLLC; DELLA protein GAI
TrEMBLA0A1J6K2Q10.0A0A1J6K2Q1_NICAT; Della protein gai
STRINGXP_009788345.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1696445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-119RGA-like 2
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]