PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03243g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20493.4 Da PI: 9.515

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03243g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.4	1.2e-15	16	62	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +e+k r+vtfskR++ +l KAeE S ++a+v v++fs++gk Niben101Scf03243g00004.1 16 YVESKEARYVTFSKRKASLLRKAEEFSMVTGADVGVLLFSPSGKPCS 62 5799***************************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-20	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.871	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-23	8	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-13	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-18	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-13	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-13	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MARRTSRGRQ KIEMKYVESK EARYVTFSKR KASLLRKAEE FSMVTGADVG VLLFSPSGKP 60 CSYTSTSVEK IIEKFREWKQ HNADEGKSSV FQAFDDLCKD IQDENEKGKS RELRYKVMYP 120 GAEIPPDKER LEKLVEMKLR LDKINEAAKN HIRTERLKFD LNVVPEYEVG ESSGTHH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240978.1	1e-123	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1J6KKR9	1e-122	A0A1J6KKR9_NICAT; Agamous-like mads-box protein agl61
STRING	XP_009618478.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	2e-18	AGAMOUS-like 29