PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03278g04009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 406aa    MW: 44307.6 Da    PI: 8.7591
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03278g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1289.8e-40602122135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl+++ p+i el+++++ + ++  +++++ss++ ++
  Niben101Scf03278g04009.1  60 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKASAPSISELPSLNAFPDTQQiSEDKKSSAGTEQ 144
                               689*************************************************************555543332222222222222 PP

                       TCP  86 ssg.................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                               + +                  + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k++
  Niben101Scf03278g04009.1 145 GLDsadvemdgdpnyqhqhhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEN 212
                               222445555666666677656667777999999999999*****9*****************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-4061209IPR005333Transcription factor, TCP
PROSITE profilePS5136932.33662120IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.972189208IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEVDEIQKQG CKFPRINGNG RFESQDENEA MKGSNGLGGG GIGRLCGWPS NRIVRVSRAS  60
GGKDRHSKVW TSKGLRDRRV RLSVNTAIQF YDLQDRLGYD QPSKAVEWLL KASAPSISEL  120
PSLNAFPDTQ QISEDKKSSA GTEQGLDSAD VEMDGDPNYQ HQHHVSLSKS ACSSTSETSK  180
GSGLSLSRSE NRVKARERAR ERAAEKEKEK ENESTRTAHH QNVHRISQNS SFTELLTGGL  240
LGLRGNDNST SGYQAQVHLG NPIQQQPQPL PMSSPMFSIT GDHHPELQHF PFLSDHLGTN  300
GHANNSANEY NLNFSISSSS SSGLAGYNRG TLQSNSSSLL PHFQRYEGSQ SFFNGSTIAA  360
ATAPNNTAAT SVGIHHHLLS AYDAGRLQLF YNDSRQSNQK GKGKLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2467121155Putative transcription factor PCF6
5zkt_B7e-2467121155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588486.10.0PREDICTED: transcription factor TCP2-like isoform X1
RefseqXP_018622784.10.0PREDICTED: transcription factor TCP2-like isoform X1
RefseqXP_018622785.10.0PREDICTED: transcription factor TCP2-like isoform X1
TrEMBLA0A1S4DFF70.0A0A1S4DFF7_TOBAC; transcription factor TCP2-like
STRINGXP_009588486.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2