PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03283g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 434aa    MW: 49148.6 Da    PI: 4.8021
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03283g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.11.4e-22141443128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLp.kkvkaeekew.yfFskrdkkyatgkrknratksgyWk 84 
                                GfrF+Ptdeel+ +yL k v+ k++++ ++i+  ++y k +Pwd+  +++ ++++++ yfF+k ++++a g+r +r+   g Wk
  Niben101Scf03283g02003.1  14 LGFRFRPTDEELI-HYLLKFVSCKNFSC-DHIRVENLYgKKKPWDIFeNNFLGDDTKVnYFFTKLKRTKAGGSRFSRV--GGCWK 94 
                               6************.**************.8899999983569****6455555555545******************7..89*** PP

                       NAM  85 atgkdkevlskkgelvglkktLvfykgrapkge.......ktdWvmheyrl 128
                                  k+k+v++ +++l g kk++ + ++++++ +       +  W m+ey+l
  Niben101Scf03283g02003.1  95 GVDKHKSVFK-GSKLAGFKKSFRYLEKDSRTEKsvdqgiqNIVWNMNEYSL 144
                               *********9.9*************543332221233333678******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-2411171IPR003441NAC domain
PROSITE profilePS5100522.60312171IPR003441NAC domain
PfamPF023656.0E-1415144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MTISSHNYGP NPVLGFRFRP TDEELIHYLL KFVSCKNFSC DHIRVENLYG KKKPWDIFEN  60
NFLGDDTKVN YFFTKLKRTK AGGSRFSRVG GCWKGVDKHK SVFKGSKLAG FKKSFRYLEK  120
DSRTEKSVDQ GIQNIVWNMN EYSLNDNILK VLRQQNILQH EDYVLCCIKR KSVHANDHME  180
IADSGNNVVA VMNTMLSTTQ HDYVTSSSED QGTGVHDLCP SNQFSSSEHN NAFHQLQLVD  240
VQAQNIEEMA PSVQSHVEYV GSSSTTSNQF TYYSPDNDGF QLQQDHSNIE SDDRATVLST  300
LAEIRNNIDH VDMKVYQYLG SLLAEKSNTA EPQLPICNTD EQNIMSQMAQ GSSTAMVNEE  360
NIDAGFVSDQ WSIKQVHNIE ERAPITFTDM LTSSDYHAEP CLVINSDECF AMEELLGSDD  420
DDVIAADLVW MTTQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798779.10.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A1U7YHQ50.0A0A1U7YHQ5_NICSY; putative NAC domain-containing protein 94
STRINGXP_009798779.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10426625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-20NAC domain containing protein 2