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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf03289g00001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | GeBP | ||||||||
| Protein Properties | Length: 216aa MW: 25084.9 Da PI: 10.4824 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 30.6 | 9.1e-10 | 71 | 115 | 48 | 97 |
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
+++++q+ +K+++LK+K++k + + ++++hdqki+e++++iWg
Niben101Scf03289g00001.1 71 NFTEKQIAKKLKKLKEKYHKLARS-----KSLIKTPHDQKIYEIARQIWG 115
6899***************99988.....6789****************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04504 | 7.6E-10 | 42 | 115 | IPR007592 | Protein of unknown function DUF573 |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 216 aa Download sequence Send to blast |
MTTPPRPKRN PTSAANHRQN PPKSPGKPIP ITKTISKTPE THRVFTENDE IQLLKTFSGS 60 PNTSEFTSNG NFTEKQIAKK LKKLKEKYHK LARSKSLIKT PHDQKIYEIA RQIWGRNVAK 120 GKEKEPVVEL HRSREEEVNL EEFPFLVSEM MSVFGRSWYC KEGLRRLGKE KLKKMNEKWM 180 ELRLKEAEIM VNKAKLYHEQ LKSVVEGSKG TDNEEN |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016475702.1 | 1e-132 | PREDICTED: uncharacterized protein LOC107797339 | ||||
| TrEMBL | A0A1S4AG93 | 1e-130 | A0A1S4AG93_TOBAC; uncharacterized protein LOC107797339 | ||||
| STRING | XP_009757927.1 | 1e-130 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA13634 | 7 | 8 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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