PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03309g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 572aa    MW: 66537.2 Da    PI: 9.8433
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03309g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-15169251590
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l+ g l +pk+fa ++g+k +++  l+++de+ rsW+++l  + ++ ++++++G ++F  +n LkegD ++F+++ + +
  Niben101Scf03309g03005.1 169 TIRPYCLTYGFLNVPKHFACANGLKLNKKCILIIRDERQRSWTLRL--SVCKTQVYIGDGLRKFIADNCLKEGDRIMFEVVTN-G 250
                               56789999999***********777777779***************..999999*************************8764.3 PP

                               E CS
                        B3  90 f 90 
                               +
  Niben101Scf03309g03005.1 251 E 251
                               3 PP
2B341.72.1e-13268348798
                               .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                        B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                               +++ +k + l +p  f+ ++  k++e++  +   + g++W vk+  ++++    +++GW +F+++++L+ gD++vF+++g++ef 
  Niben101Scf03309g03005.1 268 RKYQGKFSHLKIPIGFL-KYL-KEHENVHAI-LRRGGKKWLVKV--NGRR----MEDGWTDFAEEHDLQLGDMLVFRHEGNMEF- 342
                               556666677999*9999.673.334555555.5569********..8887....89**********************999999. PP

                               .EEEEE- CS
                        B3  92 lvvkvfr 98 
                                 v++f 
  Niben101Scf03309g03005.1 343 -DVSIFG 348
                               .888875 PP
3B343.17.6e-14412483681
                               ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                               ++++ l ++ + +p++fa ++ +++++  +++++  + rsW++ l    +s+++++++GW eF+ ++ LkegD ++
  Niben101Scf03309g03005.1 412 VRPYCLLKHFVAIPRHFALKNRLNNRKC-MIIIR-DERRSWTFSL--YTSSNTTYFGRGWHEFCIEKCLKEGDRII 483
                               56777788889**********9997665.55555.588*******..9*************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-44191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-17163259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-17163258IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.616165260IPR003340B3 DNA binding domain
SMARTSM010197.1E-15166260IPR003340B3 DNA binding domain
PfamPF023624.2E-13169254IPR003340B3 DNA binding domain
CDDcd100172.32E-10178245No hitNo description
PROSITE profilePS5086312.464262350IPR003340B3 DNA binding domain
SMARTSM010193.0E-10263350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-18266350IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-10268347IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-16272356IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-12272347No hitNo description
Gene3DG3DSA:2.40.330.103.9E-15405484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-14406483IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.8E-7407499IPR003340B3 DNA binding domain
PROSITE profilePS5086310.447407509IPR003340B3 DNA binding domain
PfamPF023621.5E-11411483IPR003340B3 DNA binding domain
CDDcd100171.79E-10419480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MATVDDVQVN ILGRMPSKAL DKLVKQLVMG KERKTEEYDK LPIGFLKYLK GYDCIEHAIL  60
RRGSKKWLVK VNGRLLEEGW EKFAEEHDLQ LEICWCSDMK EIWSLKFPYF IQINVKEDMK  120
KNKKSIMLKK LPRNLNSKPS PSNKSSNKVS ADAEAAANEP FGHSKFVCTI RPYCLTYGFL  180
NVPKHFACAN GLKLNKKCIL IIRDERQRSW TLRLSVCKTQ VYIGDGLRKF IADNCLKEGD  240
RIMFEVVTNG ETPIWKFRLS LVGKTPMRKY QGKFSHLKIP IGFLKYLKEH ENVHAILRRG  300
GKKWLVKVNG RRMEDGWTDF AEEHDLQLGD MLVFRHEGNM EFDVSIFGSR FCEREYAAYM  360
QEDEDEEEET PKKFDLEEKP KANIKASDKA FPNVKAAEKD KHLSDSHFIC TVRPYCLLKH  420
FVAIPRHFAL KNRLNNRKCM IIIRDERRSW TFSLYTSSNT TYFGRGWHEF CIEKCLKEGD  480
RIIYDIVVSI KKLDLRGSPS LHPDEVKKKN LDVNRIMTTD ATSPKVQVPA STSADANPHF  540
ISTIKPYTIK SWFGKYSGKD VKNYPQKPLK RY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261608.11e-131PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1S4CW371e-122A0A1S4CW37_TOBAC; putative B3 domain-containing protein REM15
TrEMBLA0A1U7Y0W91e-123A0A1U7Y0W9_NICSY; B3 domain-containing protein REM7-like
STRINGXP_009792889.11e-124(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-27B3 family protein