PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03309g03008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 128aa    MW: 15288.5 Da    PI: 8.4553
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03309g03008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-1232863799
                              EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +  + +++W vkl  ++++    l++GWk+F+++++L  gD ++F+++g++ef   v++f++
  Niben101Scf03309g03008.1 32 AVLRRGSKKWLVKL--NGQR----LEEGWKKFAEEHDLWLGDLFIFRHEGEMEF--EVTIFDS 86
                              5666788*******..8887....***********************9999999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-16589IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-9885No hitNo description
SMARTSM010194.2E-91087IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-152698IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-83086IPR003340B3 DNA binding domain
PROSITE profilePS5086310.873387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MKVRPAKPHF FKPILPGFKR ALYLKGHGHE HAVLRRGSKK WLVKLNGQRL EEGWKKFAEE  60
HDLWLGDLFI FRHEGEMEFE VTIFDSSHCD REYAEYLQDE EEAHTVKDPS KKFEIKGRMY  120
YTMNAVYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254328.12e-70PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1J6HXR22e-69A0A1J6HXR2_NICAT; B3 domain-containing protein rem6 (Fragment)
TrEMBLA0A1U7WNN75e-68A0A1U7WNN7_NICSY; B3 domain-containing protein REM5-like isoform X4
TrEMBLA0A1U7WSI25e-68A0A1U7WSI2_NICSY; B3 domain-containing protein REM5-like isoform X3
STRINGXP_009781505.11e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.18e-23B3 family protein