PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03309g07006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 240aa MW: 26601.2 Da PI: 7.838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03309g07006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	56	102	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riN f++Lr l+P++ K++Ka+ L +++ +k+L Niben101Scf03309g07006.1 56 KSHSEAEKRRRERINAHFATLRNLVPSS-----HKMDKAALLAEVICQVKQL 102 58***********************8.....6********99999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.199	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-10	56	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.58E-11	56	104	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-14	56	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	56	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-12	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	5.0E-5	141	184	No hit	No description
CDD	cd04873	1.00E-5	141	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MNCQITGNLS EFYENEAKGV PQSLVLDSEK GELAKASGRV GKKTGKSEGK SIAALKSHSE 60 AEKRRRERIN AHFATLRNLV PSSHKMDKAA LLAEVICQVK QLKETATHVS ENFFIPLDSD 120 EIRVETDDEN AGDGTCLFKA SICCEYRPEL LSDLREVINS LHVNLVKSEI STLGSRVKNI 180 FVFTKVIDGG HANIEAREIL LTSARQAFSS VLDKVSAYPE YSTYSNKRRR ISCFDSSSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	230	KRRRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624214.1	1e-156	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A1J6JRP8	1e-154	A0A1J6JRP8_NICAT; Transcription factor bhlh30
STRING	XP_009624214.1	1e-155	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6730	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	5e-36	bHLH family protein