PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03310g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 212aa    MW: 23503.2 Da    PI: 9.2965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03310g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-20135185255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIrdp+ +g  +r++lg+f ta eAaka+++a+ k++g
  Niben101Scf03310g00003.1 135 HYRGVRQRP-WGKYAAEIRDPTRRG--ARVWLGTFHTAIEAAKAYDRAAFKMRG 185
                               7********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32134194IPR001471AP2/ERF domain
CDDcd000185.68E-31135193No hitNo description
SMARTSM003801.0E-36135199IPR001471AP2/ERF domain
PfamPF008471.4E-13135185IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22135195IPR016177DNA-binding domain
PROSITE profilePS5103223.709135193IPR001471AP2/ERF domain
PRINTSPR003676.9E-14136147IPR001471AP2/ERF domain
PRINTSPR003676.9E-14175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTESSSSQSE SASSDSLPFY FLSNSFDFEA DFFQFGNEVS NSSSESANSV HNSTSFIKLK  60
TEPTISSSEI EKSQVIIDLT SPKLSNVGDW KPSLKIDLPP VKKFEWIGFG NSTTLSTSIV  120
SVTMQQKVKT EEKRHYRGVR QRPWGKYAAE IRDPTRRGAR VWLGTFHTAI EAAKAYDRAA  180
FKMRGSKAIL NFPLEVGKNL SYSSSSVDGG ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-32134196163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609421.11e-124PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803417e-43EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A1S4AWP91e-122A0A1S4AWP9_TOBAC; ethylene-responsive transcription factor 5-like
STRINGXP_009609421.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-42ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]