PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03321g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 233aa    MW: 25788.8 Da    PI: 5.7483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03321g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.6e-164696256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                               y+GVr++  + +Wv+ +r+p+    + kr++l ++ tae+Aa+a++ a+++l+g+
  Niben101Scf03321g01009.1 46 IYRGVRRRN-NDKWVCVLREPN----TqKRIWLRSYPTAEMAARAHDVAALALRGH 96
                              69****887.8*********83....25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-114596IPR001471AP2/ERF domain
CDDcd000181.08E-2445105No hitNo description
SMARTSM003807.0E-2246109IPR001471AP2/ERF domain
PROSITE profilePS5103219.4446103IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1846105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-2546105IPR001471AP2/ERF domain
PRINTSPR003671.4E-54758IPR001471AP2/ERF domain
PRINTSPR003671.4E-56985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MMDNSSSSCS SVIRAEASDE EVILLASSKP KKRAGRKKLK ETRHPIYRGV RRRNNDKWVC  60
VLREPNTQKR IWLRSYPTAE MAARAHDVAA LALRGHLATL NFADSAWRLQ VPVSKDPKDL  120
RQAAARAAEA FWPGEETDVN SRGAANAGNG HEEMKAAAEE NAANDCMQNL VTAENVLYSN  180
SCGEVGTFGT QEWQTNMEEG SLLSPNPCLL GSCFSWDDDV ESNVEVLLWS YSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228547.11e-153PREDICTED: dehydration-responsive element-binding protein 1E-like
TrEMBLA0A314KMZ11e-152A0A314KMZ1_NICAT; Dehydration-responsive element-binding protein 1f
STRINGXP_009785658.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.22e-30ERF family protein