PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03332g02010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 383aa MW: 42747.7 Da PI: 7.5395

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03332g02010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90	3.3e-28	67	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk+++dgkw+++++ ++Hn Niben101Scf03332g02010.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDAG---TSRRPSVKKTDCKASMHVKRKRDGKWYIHEFIKDHN 148 9*************************************999888...7788899************************* PP FAR1 87 Helap 91 Hel p Niben101Scf03332g02010.1 149 HELLP 153 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-26	67	153	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MVEHGVVVQS SLQVIGDMVD AIDNTRHNRD GGVATSPKRS ITGVEGNADL EPRDGIEFES 60 HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD AGTSRRPSVK 120 KTDCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKIRAIE LGEEGSLSEE SYGIAFRVLD EALKDCVNVN NRSSTLTECT TSAIGLRDLE 240 QDTQGIHATQ TSRKKNTNKK RKVHTEPEAT IVEAQDSLQQ MDNLSVGGMT LNGYYGTQQN 300 VQGLIQLNLM EPPHDGYYVN QQNMQGLGQL NTIAPGHDGF FGSQPSIPGL GHLDFRQPSF 360 TYGLQDEPSL RASQLHGHSP RHA

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MVEHGVVVQS SLQVIGDMVD AIDNTRHNRD GGVATSPKRS ITGVEGNADL EPRDGIEFES  60
HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD AGTSRRPSVK  120
KTDCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKIRAIE LGEEGSLSEE SYGIAFRVLD EALKDCVNVN NRSSTLTECT TSAIGLRDLE  240
QDTQGIHATQ TSRKKNTNKK RKVHTEPEAT IVEAQDSLQQ MDNLSVGGMT LNGYYGTQQN  300
VQGLIQLNLM EPPHDGYYVN QQNMQGLGQL NTIAPGHDGF FGSQPSIPGL GHLDFRQPSF  360
TYGLQDEPSL RASQLHGHSP RHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767065.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_009767066.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_016495821.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495822.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495823.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495824.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495825.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495826.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495827.1	1e-130	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Swissprot	Q9SWG3	4e-75	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A444XVD3	1e-170	A0A444XVD3_ARAHY; Uncharacterized protein
TrEMBL	A0A445BF52	1e-170	A0A445BF52_ARAHY; Uncharacterized protein
STRING	XP_009767065.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-67	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]