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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf03350g08003.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | G2-like | ||||||||
| Protein Properties | Length: 290aa MW: 31820.8 Da PI: 6.972 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 77.4 | 1.8e-24 | 11 | 55 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45
k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++h
Niben101Scf03350g08003.1 11 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYH 55
79******************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 9.625 | 8 | 67 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 10 | 55 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 6.09E-10 | 10 | 57 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.1E-16 | 11 | 54 | IPR006447 | Myb domain, plants |
| Pfam | PF14379 | 2.6E-23 | 92 | 138 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 290 aa Download sequence Send to blast |
MEPINPSLAG KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHKYRLA 60 KYLPDSSSDG KNSDKKESGD MLSSLDGSSA GVQINEALKL QMEVQKRLHE QLEVQRQLQL 120 RIEAQGKYLK KIIEEQQRLS GVLSEVPVSA VTPSLAGENG PESHNRTDPG TPAPTSQFPA 180 VDKPVQEHAP MKILSIDQSF SSQHEPLTPD SGCRETSPIN SPEGERLSKK QRVGAFTKAD 240 TLLPHQIIES SLSSQYQQPD PVLFLARDQF NLSSGLTLGN EGSKVSGNNM |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 7e-18 | 10 | 62 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009602574.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602575.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602576.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602577.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602578.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602579.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602580.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_018626851.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_018626852.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_018626853.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Swissprot | Q9SJW0 | 1e-113 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
| TrEMBL | A0A1S3XHH7 | 0.0 | A0A1S3XHH7_TOBAC; myb family transcription factor APL-like | ||||
| STRING | XP_009602574.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2796 | 24 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 1e-81 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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