PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03366g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 289aa    MW: 33038.9 Da    PI: 5.39
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03366g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.7e-49101381129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrF P+deel+++yL kk++++++    ++ evd++ +ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWka
  Niben101Scf03366g00002.1  10 LPPGFRFFPSDEELICDYLYKKIANQEVIK-GTLVEVDLHICEPWQLPEVAKLNSSEWYFFSFRDRKYATGFRTNRATISGYWKA 93 
                               79************************9555.78***************87788899***************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                               tgkd++vl+  +g l+g++ktLvfy++rap+g kt W+mhe+rle
  Niben101Scf03366g00002.1  94 TGKDRTVLDPrTGGLIGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                               ********9878889***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-609156IPR003441NAC domain
PROSITE profilePS5100556.75810156IPR003441NAC domain
PfamPF023656.3E-2611137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGLRDIGETL PPGFRFFPSD EELICDYLYK KIANQEVIKG TLVEVDLHIC EPWQLPEVAK  60
LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV LDPRTGGLIG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKGTKD DQNNTSNNLS SENMYEVSVT  180
SPEFVVSPLN NMDNHGSTMP KLLQYGDGDG YHTLTGSNSV HQNQNSSNLQ LSQEINKVLA  240
NEIVHSKCGK EDEFGFLYDM NFEEYSSLQD GGVHNSCIGD IRFEDENSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-46915616165NO APICAL MERISTEM PROTEIN
1ut4_B8e-46915616165NO APICAL MERISTEM PROTEIN
1ut7_A8e-46915616165NO APICAL MERISTEM PROTEIN
1ut7_B8e-46915616165NO APICAL MERISTEM PROTEIN
3swm_A9e-46915619168NAC domain-containing protein 19
3swm_B9e-46915619168NAC domain-containing protein 19
3swm_C9e-46915619168NAC domain-containing protein 19
3swm_D9e-46915619168NAC domain-containing protein 19
3swp_A9e-46915619168NAC domain-containing protein 19
3swp_B9e-46915619168NAC domain-containing protein 19
3swp_C9e-46915619168NAC domain-containing protein 19
3swp_D9e-46915619168NAC domain-containing protein 19
4dul_A8e-46915616165NAC domain-containing protein 19
4dul_B8e-46915616165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242884.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE64e-65NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1J6IRQ90.0A0A1J6IRQ9_NICAT; Nac domain-containing protein 2122
STRINGXP_009779378.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-92NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]